Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00830 ATGGCTGGTGTTTCTAGCAGAACTCGTAGCAAGATTGTTGGTGTTTCTGGCAGAACTCGTAGCAAGAATGTTCCATTGTTCGGTTGTCTTTCACTTTATGGGTCATCTTCAAAGCGGAGAAAGAATGTTGAAAATGATAAGGGTTTGGAATCTGTTTCAGTTTCAATTTCTGGGTCTAAAAGAATGAGGATCAAAGATGAACCTTTTGTGATGATAGATGGTGTTTCTAGCAGAACTCGTAGCAAAAATGTTCCGTTGTTGTTCGATTGTCTTTCACTTGATGTTTCATCTCTAAAGCGGAGAAAAACTGATGAAGATGATATGGGTTTGGAATCTGTTTCTGGGTCTAAAGATAGGAAGGTAAATGAAGGTGTTATTTCCATCCATGCTGATGAAGATGTTGAAGGGTTGGAGCAATGTGATGAGAAGAAGATTAAGGGTGATGTTGATGTTAATAAGGAAGTGAAAAGTGATGAAAGTGGTGAGATTGATGCTAAAGATGGAAACTTTGTTGATGAAAAGTGTGATTTGGAATCTGAAAATCCAATTACAATAAGTGTGGGTGGTGTTTCTAGCCGAACTCGTAGCAAAAAGGTTGCATTGTCTGGTTGTCTTTCACTTGATGGTTTTGGAAAAATGAGGGTAAAGGGAGAAGCTTTTGTGGATCTTGAGAATGATAAGGTTATTTCCATCcatgttgatgaagatgaagaagggtTGGAGCAATGTGATGAAAAGATGTTTGAGGGTGATGTTGTTGATGTTATAAAGGAAGTGAAAAGTGATGAGATTGCTGATAAAGATGAAAACTTTGTtgatgaaagtgatgatgaagaactgtctgttgatgttgatgatgtggAAGGGTCGGAGCAATGTGATGAGAAGATGTTTGAGGGCTGTGTTCATGTTGAAAAGGAAGTAAAAATTGATGAAAGTGGAGAAATTTGTGAGATTGCTGATAAAGATGGAAACTTTGTTGATGAAAAGTGTGGTTTGGTACCGGAAAACCCGATTACAGTAAGTGTGGCCGGTGTTTCTAGCCGAACTCGTAGCAAAAATGTTCCATTGTTCGGTTGTCTTTCACTTGATAGTTTATCTTCAAAGAGGAGAAAGAATGATAAAGATGAAATGGCTTTGATATCTGTTTCTGGGTCTCGAAAAATGAGGGTAAATGGAGAAGTTTTGGTGGTTCCTGAGAATGATAAGGTTATTTCCATccatgatgataatgatgttgatgatgaagatgaaaagGGGTTGCAGCAATGTTGTGAGAAGATGCTTGAGGGTGTTGTTGATGTTATAAAGGAAGTTAAAAGTGGTGAGATTGCTGATAAAGATGAAAACTTTGATGAAAACTTTTCAGATGAATCTggtgaaagtgatgatgaagaacttgttgatgttgattctgatgatgatgatgatgatgaagaagaagatgagagtgAGGAAAATGAGACCAGTGATGAAGATTTTAGAgttgatgaggatgatgatgatgcagagggggaggaggaggaggaggaggaggaagtgGAGAAGAAGAAGGGTTGGAGAAAATACTACAATGTTGATGATGGTACGGAGGAGGAAGGAGAGGAGGATATAGAAAAGTTGTGGCAAGAACGTGCCATGATGGAGAAGGAGCTGTTGAAGGataaaaaaagtggaatttctgAGAAGAATAATGAGGAGGTAAAGATTGAGAGTAGTCCTTTTTCTATTAACaacaatgatttgaaaatggTTTGTTTTGACCCAATGAAGAGTTCTTCCAACCTGAATAAATTATCCGAGAAAAGCAATTCAAAGAGTGTAGGGATAATAAACATGCAAAATGtcagtgatgaagatgatgttCAAGTTATTGCTGATCGTCCCAAGAGTGTTGATTCTTCTAAGCTTCACAAGGGCGAGACAAATAATGgcgaggaggaggaggaggagaaggTTTGGAGAAAATACGATGTGGTGAAGGAGGACGAAGAGGAGGGTATGAAAAAGTTGTGGCAAGAATATGACAGCGTGTTGGAGGAGGTGaaggataaaaaaaatggtatttCTGAGAAGAATAGTGAGAATAAAACATCCAAGAAGCGCAAGTCAAAAACTGTAGACATAAACATGCAAAATGTATGTGATGATGTTCAAGTTATTGCTGATCATCCCAAGAGTTTTGGTTCTTCTAAGCTTCACAATGGCAAGACAAATAATGGCGAGGAGAAGGTTTGGAGAAAATACGATGTGGTGGAGGAGGACGAAGAGGAGGCTATGAAAAGGTTGTGGCAAGAATATGACAGTGTGTTGGAGGATGTGAAGGATACAAAAAATGGTATTTCTGGGAAGAATACTGAGAATAAAACATCCAAGAAGCGCGAATCAAAGAGTGCAGACATAAACATGCAAAATGTCTGTGATGATGTTCAAGTTATTGCTGATCATCCTAAGAGTTTTGGTTCTTCTAAGCTTCACAAGGGCGAGACAAATAATGGTGAGGAGGAGGAGAAGGTTTGGAGAAAATACGATATGGTGGAGGAGGACGAAGAGGAGGAGATGAAAAAGTTGTGGCAAGAATATGACAGTGTGGTGGAGGATGTGAATGATAAAAGAAATGGTATTTCTGAGAAGAATACTGAGAATAAAACATCCAAGAAGCGCGAGTCAAAAAGTGTAGACATAAAGATGCAAAATGTTTGTGATGATGTTCAAGTTATTGCTTATCATCCCAAGAGTTTTGGTTCTTCTAAGCTTCACAAGGGTGAGACAAATAATGCCAAAGCAAAAGCCAAAGATTATGTTAAAGTTAACGACATTGTGAATGTTGATGATTGTTATGAAGGAAAACATGTCAAAGGTTTAGGCGTTGAAGGAGTTTCTTTGTTTCAAgcaaaacaagaaaagaagaggTTTTTAGATGCACAAAAAATGCCGGAGAACAAAGGAAGGGATTATAAAGGCAGAGTTAGCATCTGGAATGGTGAGAAGAAGGCAACCATGGAAAACAGTGGTTTGAATCGAAGGGTAAATAGCACACTATTTATGCGGAAGGAGTTACGTTTGGCTAAACTCCTTGCCGAGTGCTATTTGGGCGACAAGAATGATAACATGAAGAATGATCCAATTCTATTGGAGATCAAGGATGACACCATTGATCGTAGAGATACACGGCCACCACCGGTTTGTGTAGAGACACCATCATTGATATGGAGCCTAAAAAAGGTTGAAAAAGTGGAAAAGACTAAGGAGGAGGAGGAGCAGGAAATGTTATGGGATCAAGTGGATACATCCCTTAGAGAATTAGAAGCTGAATCCATGATTGGAAGTTTAGGGACAAATGAAGTTAAAGAAGAAAACATGGGAAATTCATCCACTCTCTGTGAACATGATACTCGTCTCGACGATGAGATTGGTGTATATTGCAGATGGTGTGGTGTGGTTATCACTGAGATCAAATATATCTCACCACTGGTGGTGGATCGATTTCCCTACGAAGGTTCTGGAAAAAGAACTTCATTTGATGATTCAGTTAACACCTCACTCTTTGATGGATCTCAATTCGATGTTTCTGATAATGAATCAGTGCCAAATTTCTCTTATATTAGAGGCACAGTTTGGGATCTAATTCCTGGTGTGAAACAAACTTTATATCCTCATCAACAAGAAGGCTTTGAGTTCATTTGGAAAAACTTGGCAGGAAACATTCGTCTTCGCAAGTTGAAGAACGCCAATCCTCACAGAGAGGGTGGCTGCATTATCTCCCATGCTCCTGGAACTGGAAAGACAAGGTTGACAATAATGTTTCTCATGGCATATATGAGAGTGTTCCCGAAATGCTTTCCGGTTATTGTTGCTCCTGCGGGTATGTTACTTACTTGGGAAGACGAGTTCAAAAAATGGGACATTGGAGTTCCATTTCATAATCTTAACAGTTCTGAGTTATCTGGTAAAGAGCACGGTGATGCCGTTAATTGGTCTAATACACGGCAAAGTAAGGACGAGATTAGGATGGTAAAACTGATTTCGTGGTTCAAAGAAAAGAGCATTCTGGGAATAAGTTACGCTTTGTACAAGATCCTAGCCGGCGGAAGTGGGGAATTCaaagataagaaaaaaaagaaaaaacatcatgctgaaaaaatgaaaaatgaaaaacatgcAGATGTggagaagagaaaagaaaatgatgTTATGCGAAAGGTTCTACTTGAAGTTCCTCGTTTGTTAGTTCTAGATGAAGGACACACACCTAGAAATCGAAGAAGTAATATTTGGAAGGTGTTATCGGAAGTTCAAGCGCGTAAGCGAATTATCCTTTCCGGAACTCCTtttcaaaataactttttggAACTTTACAACACATTTAGCTTAGTGAAGCCTTCTTTTCCTAACACGATACCTCATGAGCTGAAAAAATTTTGCGAACGCAAAAATGCATCGAAAGAATGGAGTTGGGAAGCGGATTATGGCGATAGTACACAATGGAGCAATCCTTCTGATGTTAAGATCAAGCAGTTGAAAATGCTTATGGATCCCTTTGTTCATGTGCACAAAGGAGCAATCCTTCAAAAGAAGCTTCCCGGGTTAAGAGATTGTGTACTGATTTTAAAGCCGGACAGTTTGCAGAAGCAAATTATCGAGAGCATTCAAAGTGATCAGAACATATTGATTTTTGAGCGTAAGCAGACAATGGCATCTGTCCATCCATCTCTTCTCCTCCAATGCAAACTcttggaagaagaagaatctgTTGTTGACAAGGATCGGCTAGAAAAGCAATGGTTAAATCTATATCTCGGTGTCAAAACAAAGTTTTTGTTGGAGTTTGTTAAACTTTGCGATGCTTATAATGAGAAAGTTCTTGTGTTCAGCCAATTCCTCAATACTTTAAGCTTAATTGAAGACCAATTAAACTCAGTTTTTAAATGGACCCAAGGAAAGGAAATTCTGTACTTGGATGGAAATGTTGATCTAACGGAAAAGCAGTCCCGAATCCATAGCTTCAATGATGCAAATTGCCAAGCAAAGATTATGCTTGCTTCAACGAGAGCTTGTTCCGAGGGAATCAGCTTAGTTGGTGCTTCAAGGGTTGTGCTTCTCGACGTTGTATGGAATCCATCCGTAGAACGACAGGCTATCAGCAGAGCCTATCGGATTGGACAGAAGAAGGTCGTGTACACTTACCATCTTCTCACTCAAGGGACTGCTGAATACGCAAAATATTGTAAACAGTCGCATAAGGACCGGTTATCTGAACTCGTATTTACAGCCAAAAATGCCGATAATGATGATGAGTCAAAGAGCTGCGCTGTGAACATTGAAGATAGAATTCTTGATCAGATGATGCAGCACGAAAAGCTCAAAGACATGACTACTTGCAAAGGGGACCTCTCATCTAGCTGGGAAAAATTGTCTGCAAAGAGCAGTGTGTAA 5436 0.3602 MAGVSSRTRSKIVGVSGRTRSKNVPLFGCLSLYGSSSKRRKNVENDKGLESVSVSISGSKRMRIKDEPFVMIDGVSSRTRSKNVPLLFDCLSLDVSSLKRRKTDEDDMGLESVSGSKDRKVNEGVISIHADEDVEGLEQCDEKKIKGDVDVNKEVKSDESGEIDAKDGNFVDEKCDLESENPITISVGGVSSRTRSKKVALSGCLSLDGFGKMRVKGEAFVDLENDKVISIHVDEDEEGLEQCDEKMFEGDVVDVIKEVKSDEIADKDENFVDESDDEELSVDVDDVEGSEQCDEKMFEGCVHVEKEVKIDESGEICEIADKDGNFVDEKCGLVPENPITVSVAGVSSRTRSKNVPLFGCLSLDSLSSKRRKNDKDEMALISVSGSRKMRVNGEVLVVPENDKVISIHDDNDVDDEDEKGLQQCCEKMLEGVVDVIKEVKSGEIADKDENFDENFSDESGESDDEELVDVDSDDDDDDEEEDESEENETSDEDFRVDEDDDDAEGEEEEEEEEVEKKKGWRKYYNVDDGTEEEGEEDIEKLWQERAMMEKELLKDKKSGISEKNNEEVKIESSPFSINNNDLKMVCFDPMKSSSNLNKLSEKSNSKSVGIINMQNVSDEDDVQVIADRPKSVDSSKLHKGETNNGEEEEEEKVWRKYDVVKEDEEEGMKKLWQEYDSVLEEVKDKKNGISEKNSENKTSKKRKSKTVDINMQNVCDDVQVIADHPKSFGSSKLHNGKTNNGEEKVWRKYDVVEEDEEEAMKRLWQEYDSVLEDVKDTKNGISGKNTENKTSKKRESKSADINMQNVCDDVQVIADHPKSFGSSKLHKGETNNGEEEEKVWRKYDMVEEDEEEEMKKLWQEYDSVVEDVNDKRNGISEKNTENKTSKKRESKSVDIKMQNVCDDVQVIAYHPKSFGSSKLHKGETNNAKAKAKDYVKVNDIVNVDDCYEGKHVKGLGVEGVSLFQAKQEKKRFLDAQKMPENKGRDYKGRVSIWNGEKKATMENSGLNRRVNSTLFMRKELRLAKLLAECYLGDKNDNMKNDPILLEIKDDTIDRRDTRPPPVCVETPSLIWSLKKVEKVEKTKEEEEQEMLWDQVDTSLRELEAESMIGSLGTNEVKEENMGNSSTLCEHDTRLDDEIGVYCRWCGVVITEIKYISPLVVDRFPYEGSGKRTSFDDSVNTSLFDGSQFDVSDNESVPNFSYIRGTVWDLIPGVKQTLYPHQQEGFEFIWKNLAGNIRLRKLKNANPHREGGCIISHAPGTGKTRLTIMFLMAYMRVFPKCFPVIVAPAGMLLTWEDEFKKWDIGVPFHNLNSSELSGKEHGDAVNWSNTRQSKDEIRMVKLISWFKEKSILGISYALYKILAGGSGEFKDKKKKKKHHAEKMKNEKHADVEKRKENDVMRKVLLEVPRLLVLDEGHTPRNRRSNIWKVLSEVQARKRIILSGTPFQNNFLELYNTFSLVKPSFPNTIPHELKKFCERKNASKEWSWEADYGDSTQWSNPSDVKIKQLKMLMDPFVHVHKGAILQKKLPGLRDCVLILKPDSLQKQIIESIQSDQNILIFERKQTMASVHPSLLLQCKLLEEEESVVDKDRLEKQWLNLYLGVKTKFLLEFVKLCDAYNEKVLVFSQFLNTLSLIEDQLNSVFKWTQGKEILYLDGNVDLTEKQSRIHSFNDANCQAKIMLASTRACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLTQGTAEYAKYCKQSHKDRLSELVFTAKNADNDDESKSCAVNIEDRILDQMMQHEKLKDMTTCKGDLSSSWEKLSAKSSV 1811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00830 1811 MobiDBLite consensus disorder prediction 1371 1392 - -
Tsu04g00830 1811 MobiDBLite consensus disorder prediction 450 513 - -
Tsu04g00830 1811 MobiDBLite consensus disorder prediction 682 707 - -
Tsu04g00830 1811 Gene3D - 1203 1498 IPR038718 -
Tsu04g00830 1811 Gene3D - 1524 1809 IPR027417 -
Tsu04g00830 1811 Pfam Helicase conserved C-terminal domain 1614 1721 IPR001650 -
Tsu04g00830 1811 CDD SF2_C_SNF 1600 1732 - -
Tsu04g00830 1811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1408 1766 IPR027417 -
Tsu04g00830 1811 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 789 1791 - -
Tsu04g00830 1811 MobiDBLite consensus disorder prediction 514 528 - -
Tsu04g00830 1811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1202 1476 IPR027417 -
Tsu04g00830 1811 MobiDBLite consensus disorder prediction 444 536 - -
Tsu04g00830 1811 SMART helicmild6 1632 1721 IPR001650 -
Tsu04g00830 1811 SMART ultradead3 1213 1470 IPR014001 -
Tsu04g00830 1811 MobiDBLite consensus disorder prediction 869 892 - -
Tsu04g00830 1811 MobiDBLite consensus disorder prediction 627 651 - -
Tsu04g00830 1811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1606 1762 IPR001650 -
Tsu04g00830 1811 MobiDBLite consensus disorder prediction 776 799 - -
Tsu04g00830 1811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1243 1462 IPR014001 -
Tsu04g00830 1811 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 789 1791 IPR044567 GO:0080188
Tsu04g00830 1811 Pfam SNF2-related domain 1233 1567 IPR000330 GO:0005524|GO:0140658
Tsu04g00830 1811 MobiDBLite consensus disorder prediction 776 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00830 Tsu-Chr4 7931356 7938446 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00830 1618 1778 RAD5 or RAD16-like Gene Family AT5G05130 34.568 1.98e-16 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu04g00830 SNF2_N 3.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00830 K10875 - gmx:100806733 842.417