Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00827 ATGGCTGGTGGTGTTTCAAGCAGAACGCGTAGCAAGAAAGTTCCATTGTTTCATAGTCCTTTGCctgattcttcatcttcaaagagaagaaagaatgatGAAGATGTTATGAGTTTTGATTCTGCTTCTGGGTCGAAAAGAACAAGGTTAAAAGATGAAGCTTTTGTGTTTCCTGAGAATGCTGAGGTTATTTccattgatgatgaagatggagAAGGGTTTAAGAAACAATGTGAAGACAAGATTGATGAGAATGGAGGAAGTAGTGAGATTGGTGATAAAGATGGAAACTTTGTTGATGAAAAGATTGGTTTGGATAGCGAAAACCCGATTATATGTTCAGATGAATCTGGTgagagtgaagaagaagaagaagaagaaggtgttAAAGAGGGAGTAAAAAGTGATGAAATTAGTGAGTTTACTGATAAAGATgaaaatttgattgttttggaTGATAGTGATGAGAGTGttaatgaagatgatgactcTGATgagagtgatgatgatgatgatgatgatgagagtGAAGAAGACGAGACGAGTGACGAAGATTTTAAAGTGGATGAACTGAATGAGgtttctgatgatgatgatgatgatagttatGATGATGAAGGGAAGAAGAAAAGGAGAATGAGGAAAGATTTTGATGTGGTGGAGGAGTTGGAGAGAGAGGTGATGGATAAAGAAAGTGGAGTTTCTGTAAACAAtgatgaagagaagaagaaaaggggaatgagaatgagaatgagaaaaGATTCTGATGTGGTGGAGGAGTTTGTGAGAGAGGTGAATGATGGACAAAGTGGAATTTGTCAGATGAAAAATGAGAAGAATGGTTCTATAATCAATGATGAAATCGAGCTTTCGGATTATTGTAGTGTAACAAATTCTACTACCTTTGAGAAGAAGGGTTCTTTTGATCAAAACAAaggttgttcttcttcttcaaacaaGAAAGAAGAATCGAAGAAACAGAAAGCAAAAAGTGTGGAAAATGTCTCTGATGTTGTTTCTGATTCTGGTGAAGAAAAACAGCAATATGGCAAGAGAAGATGGAATAATTCAGTAGCatcaaagaaacaaaaggaGAACAATGCTTTCAATCAAAGGAGCATAAGCGCGTATTTTACTTCGAAGGATTTGAGTTTAGCCAAACTCCTTGCTGAATGCTATTCTGACAAGAAGAATAGCTTGAAGAATGGTCCAATTGGGTTGGAGGTGAATGGTGATAATGATGACGACGACGACGATGATGATGTAGATCCGCGAGATACACAGAAACCACCGGTTTGTGTTGAGACACCTCTGATATGGAGCCTAAAAAAGGTTCAAACAGTGGAACTGACtgaagaggaggaggaggaacgGAGGAACAATGAAGCGTTAAATCCCATATGGGATGAAATGTTTATGTGCATTAACGAATCAGAAGCTGAATCCAAGAATGAAGCATCAGAGACACATAAAGCAAAAAATGTGGAAATGAAAGTGGAAAATGTTTCTCATGATGATGATAATGCTGCCAAATCCAAAGCTAAAGACAGTGCAAAACTTACTAAAGTTGTGAAGGTTGGTGATTCTGTTGAAGGAAAAGAGAAACATGTCACAGGTTTAGGTGTTGGAGGAGTTTCTTCGGTTCAAATCAAACAAGAAATGGTGGATGATTTAgataaagagaaaatgatggaGGACAAACCAAGAGAAGAATCTAAAGGTAAAATTAACATCCAAAATGGTGTTAAGAAAGAATCCGTAGATAACAATGGTTTCAATCAAAGGGGCAAAACCACACATGCTATTCCGAAAAAGTTATCTTTAGCCCAATACCTTGCTGAATTGTATCAGAGCAACAAGGAGGATACCGTGAAGAACGAGTCAATTGTTTTGGAGATGAATGATGACGGTGTTGATCAGAAAGATACACGGCAACCACCGGTTTGTGCTGAGACACCTTCGTTGATATGGAGTCTAAAAAGGGTTGTGCAGAAGACCGAGGAAGAAAAGGAAATGGATAAGGAGCTGGAGAAGAATAAACCGTTATGGGATGAAATGGAAAGAGCCATTAGAGAATCAGAAGCTGAGTCTGAGATTGGAAATTTAGGGACAAACAGAAGTCCACCCCCTCGCTGTGAACATATCACTCTTCTCGACGAACAACTTGGTGTATATTGCAAATTGTGCGGTGATGTTATTACTGAGATCAAATATATCACGGAGCTAGTGTGGGATAGATATCCGAATGAAGGTGGTTCGAGAAGAAGGGCAACAGTTGGTGAAGACGATGTCTCGCTCTTTGATCAGTCTCACTTCAATGTTTCTGATGATGACTCGAAGGCTAATGTTTCTCATACTGAAGTCACAGTTTGGGACAAAATTCCTGGTGTGAAACAAACCTTATACCCTCACCAACAAGAAGGTTTTGAGTTCATATGGAAAAACTTGGCTGGAAGCATCGAGCTTCAAAAGTTAAAGAATGTTGATCCTCAAAGCGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACCGGAAAGACAAGGCTGACGATAGTGTTTCTCAAGGCGTATTTAAAACTGTTTCCAAAATGCTTGCCGATTGTTGTCGCTCCTGCTAGTTTACTTCTAACTTGGGAAGAGGAATTCAAGAAATGGGACATTGGAGTTCCATTTCATAATTTAAGCAGTTTAGATTTATCTGGTAAAGAGCATCCTGATGTGTTTGGCAGATTTGATAGATTTAATACACGGCATCGTAATGATGAAACACGAATGGCGAAACTGATTTCGTGGTTCAAAGAAACAAGCATTCTTGGAATCAGCTATAGTTTGTATGGTACAATTTGCcaagataaagaaaagaaaaagaatcaaaGTGTGAAGGAGAGAACAGGAGACTTTGATATACGAAAAGTTCTACTGAAAGCTCCTGGCTTGTTAGTTCTGGATGAAGGACACACACCAAGAAATCAAAGAAGTAAAATTTGGAAGGTGTTGACAAAGAAGAGTCAAACACAGAAGCGGATCATCCTTTCCGGAACTCCATTCCAGAATAATTTCACGGAGCTTTACGGCACTTTGAGCTTAGTCAAGCCTTCTTTTCCTAACATGATACCACCTGAGCTAAAAACGTTTTGTCATAAGCAGCGACGTATATCATCTAAAAAATTGGGCTGGGAAGCTGTTTCAGGCAACATAGAAAGAGACCCTTCTGATGATGATAAGATTGAGAAGTTGAAATTGCTAATGGATCCCTTTGTTCATGTTCACAAGGGCGCGATCCTTGAAAGTAAGCTTCCCGGGTTAAGGGAATGTTTGGTGACTTTGAAGGCAGATAGTTTGCAGAATGAAATTCTGAATGGAATTAAACGTTCTCAGAATACAATTTTTAACTTCGAGCGTAAGATTGCTTTGACATCTGTCCATCCATCCCTTTTCCTTGAATGTGATCTTTCGAAAAAAGAAGAATCTGTGCTCGACAAGGATCAGCTAAAACAGCTCAGACCAAACCCACATGAAGgtgtcaaaacaaaatttgtgtACGAGTTTGTTCGGCTGTGTAATGCGTCTAACGAGAAAGTTCTTGTTTTCAGCCAATTCCACGCTCCTTTACTATTGATTCAAGACCAATTAAACTCGGCTTTTAACTGGTCTAATGGAGAAATGCTGTTCATGTCCAGCAGAGATTCTACAAAGGTTAAGCAGTCCATAATCCACAGCTTCAATGATGAAAATAGCAAAGCGAAGGTTCTACTTGCAGCTACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGCTTCTTGACGTTGTATGGAATCCTTCGGTTGAAAGACAGGCTATCAGCCGAGCGTATAGGATTGGACAGAAGAAGGTGGTATACACATACCATCTTCTCGCTGAAGGGACTACCGAGGCAGAAAAATATGGTAAACAGGCCGAAAAGGATCGGTTATCTGAGCTCCTTTTTTCAGCAAAACATGCCACTGATAATGATGTGTCCAGCCGCCGTGCTGTGAACTTTGAAGATGAAATTCTTGATAAGATGACTCGACATGAAAAACTCATAGACATGTTCGTTAAGTGTGTGGTACTGAGGAAGGAGCGAGATTTGGTCTGA 4134 0.3648 MAGGVSSRTRSKKVPLFHSPLPDSSSSKRRKNDEDVMSFDSASGSKRTRLKDEAFVFPENAEVISIDDEDGEGFKKQCEDKIDENGGSSEIGDKDGNFVDEKIGLDSENPIICSDESGESEEEEEEEGVKEGVKSDEISEFTDKDENLIVLDDSDESVNEDDDSDESDDDDDDDESEEDETSDEDFKVDELNEVSDDDDDDSYDDEGKKKRRMRKDFDVVEELEREVMDKESGVSVNNDEEKKKRGMRMRMRKDSDVVEEFVREVNDGQSGICQMKNEKNGSIINDEIELSDYCSVTNSTTFEKKGSFDQNKGCSSSSNKKEESKKQKAKSVENVSDVVSDSGEEKQQYGKRRWNNSVASKKQKENNAFNQRSISAYFTSKDLSLAKLLAECYSDKKNSLKNGPIGLEVNGDNDDDDDDDDVDPRDTQKPPVCVETPLIWSLKKVQTVELTEEEEEERRNNEALNPIWDEMFMCINESEAESKNEASETHKAKNVEMKVENVSHDDDNAAKSKAKDSAKLTKVVKVGDSVEGKEKHVTGLGVGGVSSVQIKQEMVDDLDKEKMMEDKPREESKGKINIQNGVKKESVDNNGFNQRGKTTHAIPKKLSLAQYLAELYQSNKEDTVKNESIVLEMNDDGVDQKDTRQPPVCAETPSLIWSLKRVVQKTEEEKEMDKELEKNKPLWDEMERAIRESEAESEIGNLGTNRSPPPRCEHITLLDEQLGVYCKLCGDVITEIKYITELVWDRYPNEGGSRRRATVGEDDVSLFDQSHFNVSDDDSKANVSHTEVTVWDKIPGVKQTLYPHQQEGFEFIWKNLAGSIELQKLKNVDPQSEGGCIISHAPGTGKTRLTIVFLKAYLKLFPKCLPIVVAPASLLLTWEEEFKKWDIGVPFHNLSSLDLSGKEHPDVFGRFDRFNTRHRNDETRMAKLISWFKETSILGISYSLYGTICQDKEKKKNQSVKERTGDFDIRKVLLKAPGLLVLDEGHTPRNQRSKIWKVLTKKSQTQKRIILSGTPFQNNFTELYGTLSLVKPSFPNMIPPELKTFCHKQRRISSKKLGWEAVSGNIERDPSDDDKIEKLKLLMDPFVHVHKGAILESKLPGLRECLVTLKADSLQNEILNGIKRSQNTIFNFERKIALTSVHPSLFLECDLSKKEESVLDKDQLKQLRPNPHEGVKTKFVYEFVRLCNASNEKVLVFSQFHAPLLLIQDQLNSAFNWSNGEMLFMSSRDSTKVKQSIIHSFNDENSKAKVLLAATKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKKVVYTYHLLAEGTTEAEKYGKQAEKDRLSELLFSAKHATDNDVSSRRAVNFEDEILDKMTRHEKLIDMFVKCVVLRKERDLV 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 204 254 - -
Tsu04g00827 1377 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 827 1033 IPR014001 -
Tsu04g00827 1377 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 477 1376 - -
Tsu04g00827 1377 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 2 493 - -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 149 203 - -
Tsu04g00827 1377 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 493 IPR044567 GO:0080188
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 352 366 - -
Tsu04g00827 1377 Gene3D - 1100 1367 IPR027417 -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 479 519 - -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 131 148 - -
Tsu04g00827 1377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 977 1339 IPR027417 -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 316 332 - -
Tsu04g00827 1377 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 790 1047 IPR027417 -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 481 519 - -
Tsu04g00827 1377 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1179 1339 IPR001650 -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 68 102 - -
Tsu04g00827 1377 Pfam SNF2-related domain 814 1123 IPR000330 GO:0005524|GO:0140658
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 66 254 - -
Tsu04g00827 1377 CDD SF2_C_SNF 1176 1304 - -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 303 366 - -
Tsu04g00827 1377 Pfam Helicase conserved C-terminal domain 1180 1293 IPR001650 -
Tsu04g00827 1377 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 477 1376 IPR044567 GO:0080188
Tsu04g00827 1377 SMART ultradead3 797 1045 IPR014001 -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 1 53 - -
Tsu04g00827 1377 Gene3D - 767 1058 IPR038718 -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 397 434 - -
Tsu04g00827 1377 MobiDBLite consensus disorder prediction 115 130 - -
Tsu04g00827 1377 SMART helicmild6 1209 1293 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00827 Tsu-Chr4 7888057 7917692 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00827 1191 1350 RAD5 or RAD16-like Gene Family AT5G05130 36.646 3.38e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu04g00827 SNF2_N 1.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00827 K10875 - gmx:100806733 787.334