Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00820 ATGCTTGTTTCCATGAAGTGTGTACTGTCTTTGCTGTTCTTTTCAATGTGCTTTTGTGCACTCATAACTAGCCCCCCTTCTTCAATTGTTGGTTCTTCCCTAACTACTTCCACTTTACAAAGTAGAGAAGAAGCAAGTGCTTTGTTGAAGTGGAAATCAAGTCTTGACAACCAAAGCCAAACCTTACTATCTTCATGGAATGGCAATAACTCATGCAACTGGCTTGGAATTAAATGTGATAAAGATTCCATATATGTTACTTATGTAAATCTCACAAACATGGGATTAAAAGGTACACTTAAAAGTCTTAACTTCACATCACTTCCAAATATTCTTACTCTTGATCTTAATAACAATCATTTCTCAGGAAAAATTCCATATGAAATAACACAGTTGACATTTTTGTCACAGTTGTATCTAAAACACAACAAGCTTTGTGGTTCCATTCCTAGCGAAATCGGAATGATGAGATCTTTGTTAGTAATTGATTTGTCAGAAAATAGTCTCTCTGGTAAAATCCCACCTTCAGTTGGAAACTTAAGCAATTTACAATATCTTGGCTTTCATAAAAACCATCTCAGTGGGACAATACCAACAGAATTGAATATGCTTGCTAATTTGCAAGGTTTTCATGtatatgataataatttaattggTGAGTTGCCTCATAACATTTGCCAAGGTGGAAACTTGAACTACATTAGTGCTTCAAATAACAATTTTACGGGGAAAGTTCTAAAGAGTTTGAAGAATTGTTCTAACCTTATTAGACTTTGGCTTGATCACAACCATTTTGATGGAAACATAACAGATGATTTAGGTGTATACCCAAATTTGAAGTTCATGGAATTGGATGACAATAATTTTTATGGCCACCTTTCATCCAACTGGGGAAAGTTTCATAACTTGGAACAACTTCACAtctctaaaaataatatatcaggTTGTATACCACCTGAACTCGGCGAAGTAACCAACCTATATTTAATTGACTTATCTTCAAACCATCTTACAGGAAAGGTCCCGAAGGAGTTAGGCAATTTGACTGAGTTGGGAAGACTCATTTTAAACAACAACAATCTTTCTGGTAATATTCATCTACAAATAACATCATTAAAGGGTCTTGAAACCTTAGATGTTGCATCAAATAATCTAAGTGGTTTCATCACAAAAGAACTTTTCATTTTTCCTAAGTTATTGATCTTAAATTTGAGCCATAACAAATTCAAAGGAAATATTCCTGTTGATTTTGGAAATTTTAAAAACCTTCATTTTCTTGATCTCAGTGGAAACTTTTTGAATGGAACCATTCCACAAATGCTTGGAAAGTTGATATACTTAgaaacattaaatatttcaCATAACAATCTTTCTGGTCTTATCCCCACTTCCTTGGATCAAATGATTAGTTTGACGTCTGTTGATATATCATATAACCAATTGACGGGTCCACTTCCAAATATGCGAGCATTCAATACCGCTACATTTGAAGTGTTGAGAAACAATGCGGACTTGTGTGGTAATGTTTCTGGATTGAAGCTTTGCAATAAACCAACTAGTGGGTCTCATAACAATAAGACTAAGAAAGTGATCTTGTTCATAGTTTTACCTCTAGCACTAGGAACTCTAATGCTAGCGATTGTTTGTTACAAATTCTCGTATTGTTTCTTCCATTCGGCAACCACAAGGGACAACCATGTTCGAGGCAATGCCATTGCTCCTAAAAATGTGTTTACAATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATTGAAGCCACAGAAGAATTTGATGACAAATATCTGATTGGAGTAGGAGCGCATGGAAGTGTTTACAAAGCAGAGTTGCAGACAGGTCAAGTAGTTGCTGTTAAAAAACTCCACTCAGTAGTAGATGCAGAAAACCCCAATCTAAAATCATTCACAAATGAGATCCAAGCTCTAACAGAAATTCGACATCGCAACATTGTGAAGCTATATGGATTTTGTTCACATTCACACTTATCGTTTTTGGTTTACGAGTTCATGGAGAAAGGTAGTTTGGAAAAGATTTTGAAAGATGATGAGGAAGCAATTGCATTTGATTGGAATAAGAGGGTGAATGCCATTAAAGATGTAGCTAATGCTTTATGCTATATGCACCATGATTGCTCCCCTCCGATTGTTCATCGAGATATGTCAAGCAAGAATATTCTTCTGGATTTTGAATATGTGGCTCGTGTTTCCGACTTTGGAACAGCTAAGCTACTTAATCCTAATTCATCCAACTGGACCTCTTTTGCAGGCACGTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAagtgaatgagaaaaatgatgTGTATAGTTTTGGAGTATTAGCGTTGGAAATACTTTTTGGAAAACACCCTGGAGATGATATTGTGTCTAATTCTTTACAATGGATTATTATGGGCTCAACACTTGATACTATGCCATTGATGAATAAGTTGGATCAACGTCTCTCTGGTCCGGTGAATCGTCAAGCTAAGAAGTTAGTATCCATTGCAAAGACAACAATTTCTTGTTTGGCTGATAGTCCACAATCTCGCCCTACAATGGAGCAGGTTTCTAAGGAGCTTTTAAGTGTGTAG 2625 0.3512 MLVSMKCVLSLLFFSMCFCALITSPPSSIVGSSLTTSTLQSREEASALLKWKSSLDNQSQTLLSSWNGNNSCNWLGIKCDKDSIYVTYVNLTNMGLKGTLKSLNFTSLPNILTLDLNNNHFSGKIPYEITQLTFLSQLYLKHNKLCGSIPSEIGMMRSLLVIDLSENSLSGKIPPSVGNLSNLQYLGFHKNHLSGTIPTELNMLANLQGFHVYDNNLIGELPHNICQGGNLNYISASNNNFTGKVLKSLKNCSNLIRLWLDHNHFDGNITDDLGVYPNLKFMELDDNNFYGHLSSNWGKFHNLEQLHISKNNISGCIPPELGEVTNLYLIDLSSNHLTGKVPKELGNLTELGRLILNNNNLSGNIHLQITSLKGLETLDVASNNLSGFITKELFIFPKLLILNLSHNKFKGNIPVDFGNFKNLHFLDLSGNFLNGTIPQMLGKLIYLETLNISHNNLSGLIPTSLDQMISLTSVDISYNQLTGPLPNMRAFNTATFEVLRNNADLCGNVSGLKLCNKPTSGSHNNKTKKVILFIVLPLALGTLMLAIVCYKFSYCFFHSATTRDNHVRGNAIAPKNVFTIWSFDGKMVYENIIEATEEFDDKYLIGVGAHGSVYKAELQTGQVVAVKKLHSVVDAENPNLKSFTNEIQALTEIRHRNIVKLYGFCSHSHLSFLVYEFMEKGSLEKILKDDEEAIAFDWNKRVNAIKDVANALCYMHHDCSPPIVHRDMSSKNILLDFEYVARVSDFGTAKLLNPNSSNWTSFAGTFGYAAPELAYTMEVNEKNDVYSFGVLALEILFGKHPGDDIVSNSLQWIIMGSTLDTMPLMNKLDQRLSGPVNRQAKKLVSIAKTTISCLADSPQSRPTMEQVSKELLSV 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00820 874 Gene3D Ribonuclease Inhibitor 41 204 IPR032675 -
Tsu04g00820 874 Pfam Leucine rich repeat 422 481 IPR001611 GO:0005515
Tsu04g00820 874 Gene3D Ribonuclease Inhibitor 205 517 IPR032675 -
Tsu04g00820 874 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 113 872 - -
Tsu04g00820 874 SUPERFAMILY Protein kinase-like (PK-like) 579 871 IPR011009 -
Tsu04g00820 874 Gene3D Phosphorylase Kinase; domain 1 561 677 - -
Tsu04g00820 874 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 11 119 - -
Tsu04g00820 874 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 113 872 - -
Tsu04g00820 874 SUPERFAMILY L domain-like 80 198 - -
Tsu04g00820 874 ProSitePatterns Tyrosine protein kinases specific active-site signature. 723 735 IPR008266 GO:0004672|GO:0006468
Tsu04g00820 874 Pfam Protein kinase domain 601 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00820 874 SUPERFAMILY RNI-like 173 488 - -
Tsu04g00820 874 ProSiteProfiles Protein kinase domain profile. 599 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00820 874 SMART LRR_typ_2 444 467 IPR003591 -
Tsu04g00820 874 SMART LRR_typ_2 348 374 IPR003591 -
Tsu04g00820 874 SMART LRR_typ_2 396 419 IPR003591 -
Tsu04g00820 874 SMART LRR_typ_2 204 228 IPR003591 -
Tsu04g00820 874 SMART LRR_typ_2 156 180 IPR003591 -
Tsu04g00820 874 SMART LRR_typ_2 108 132 IPR003591 -
Tsu04g00820 874 SMART LRR_typ_2 300 324 IPR003591 -
Tsu04g00820 874 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 11 119 - -
Tsu04g00820 874 Gene3D Transferase(Phosphotransferase) domain 1 678 874 - -
Tsu04g00820 874 Pfam Leucine rich repeat N-terminal domain 43 80 IPR013210 -
Tsu04g00820 874 ProSitePatterns Protein kinases ATP-binding region signature. 605 628 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00820 Tsu-Chr4 7838771 7841900 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00820 86 771 Receptor kinase-like Gene Family AT4G08850 45.389 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g00820 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00820 - - mtr:MTR_7g039330 998.423