Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00810 atggAAAATGATGCTAATGAAAATATCTTTAGCACATCCTCATCATCCTCAACATCATCAATACCAACATCACCAACATCTTCtaactcaaattcaaattcaaattcatgcACCAATCAAAATCAAGACACCAAAAATAGTCCTCAAAATGGAACAACAAAGtgcaaaaaaagagagagaagtgAAAAAGACACAAAACACCCTACATATAGAGGAGTAAGAATGAGAGCATGGGGAAAATGGGTTAGTGAAATACGTGAGCCAAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCTCATGATGTAGCTGCTTTAGCTATAAAGGGTCATTCAGCTTACCTCAATTTTCCAAATTTGGCTCAAAATCTTCCAAGGCCTTCAACTACATCACCTAAAGACATTCAAATTGCAGCTGCAAAAGCAGCATCAACTGTTTTTGTGGAAGTTAAGGATTGCCAAGGTGAAAATGGTCAACAACAAAATCTTGAAGATCAAGGTTCTTCTTCAAGTGTATCTTCCATAGACAATGTTCAAGAGTCTAATTCAAGTTCTCCTAATTctactactactagtactactacTGCTACGaatgatgatattgatgataCGCTCTTCGATTTGCCGGATCTTTTTCTTGATGGAAAAAATGgacttctttctttttcttcttcttggcACTTATGTAGTGTTGATAGTGGACTTCGGCTCGAGGAGCAATTTTCGACGTGTTGGGAGTACTACTAG 771 0.3256 MENDANENIFSTSSSSSTSSIPTSPTSSNSNSNSNSCTNQNQDTKNSPQNGTTKCKKRERSEKDTKHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQNLPRPSTTSPKDIQIAAAKAASTVFVEVKDCQGENGQQQNLEDQGSSSSVSSIDNVQESNSSSPNSTTTSTTTATNDDIDDTLFDLPDLFLDGKNGLLSFSSSWHLCSVDSGLRLEEQFSTCWEYY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00810 256 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 256 - -
Tsu04g00810 256 CDD AP2 70 128 IPR001471 GO:0003700|GO:0006355
Tsu04g00810 256 Pfam AP2 domain 68 119 IPR001471 GO:0003700|GO:0006355
Tsu04g00810 256 MobiDBLite consensus disorder prediction 52 71 - -
Tsu04g00810 256 MobiDBLite consensus disorder prediction 1 51 - -
Tsu04g00810 256 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Tsu04g00810 256 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Tsu04g00810 256 PANTHER ETHYLENE RESPONSE FACTOR 8 256 - -
Tsu04g00810 256 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Tsu04g00810 256 SUPERFAMILY DNA-binding domain 69 127 IPR016177 GO:0003677
Tsu04g00810 256 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Tsu04g00810 256 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700|GO:0006355
Tsu04g00810 256 MobiDBLite consensus disorder prediction 165 208 - -
Tsu04g00810 256 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00810 Tsu-Chr4 7779162 7780388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00810 57 249 AP2-EREBP Transcription Factor Family AT2G44940 51.942 1.16e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g00810 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00810 - - gmx:100792964 263.462