Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00803 ATGGTGTTCTTATTTTCAAACCTTCGGTCCATGAAGTTGTTATCTTTTTGGATGCTTCTATCAACTTGTTTTTGTGCATCCACAATAGCCACTTTACAAAGTAGAGAAGAAGCAAGTGCTTTGTTGAAGTGGAAATCAAGTCTTGACAACCAAAGTCAAACCTTACTATCTTCATGGAGTGGCAATAGTTCATGCAACAACTGGCTTGGAATTAAATGTGATGAAGATTCCATATATGTTACTTATGTAAATCTCACAAACATGGGATTGAAAGGTACACTCAAAAGTCTTAACTTCACATCACTTCCAAATATTCTTACTCTTGATCTTAGTTTCAACTTCTTGAATGGAAATATTCCTAACCATATTGGAATGTTGTCCAAACTTTCTCATCTTGATCTTAGTCACAATCATCTCTTAGGAACAATTCCATATGAACTAACACAGTTGATTAGTCTTCATACTTTATATCtagataataatattttcaGCAGTTCCATTCCTAAAGAAATAGGTGCATTGAGGAATTTGAGAGAACTTAGTATCTCAAGTGCAAATCTCACAGGAACTATTCCAACTTCTATTGGGAATCTAACCTTGTTGTCACATTTGAATCTAGCAGGCAACAATCTTTATGGCAACATTCCAAAAGAACTTTGGAATTTGAGCAACTTAAACTACTTAACAGTTGAAGTAAATAAGTTTAATGGTTTTGTTTTTGCTCAAGAAATTTTGAACTTGCATAAGCTAGAGACTCTAGATCTTGGTGCTAATGGTCTTTCCATCAATGGTCCTATTCTACAAGATATTTGGAAGTTGGAAAATTTAACATACCTTTCTTTTCAACAATGCAATGTCAAAGGGTCTATTCCATTTTCTATAGCAAAGTTGACTAACTTGTCATATCTAAATTTAGCACACAACCATATTTTTGGTCATATCCCTATAGAAATTGGGAAGTTGAGTAAGCtagaatatttatatttttttgacaataactTATCTGGTAACATTCCTGTGGAAATTGGGGGATTGGTGAACATAAAAGCGTTACGGTTTAATGACAATAATCTTTCTGGTTCGATTCCTCGTGAAATCGGAATGATGAAAGTTGCGGTTCAAATTGATTTAAACAATAACTCTCTCTCAGGTAAAATTCCACCTACAATCGGAAACTTGAGTAATATGCAACAACTTACATTTGCTATAAACTATCTCAATGGAAAACTTCCAATGGAAATGAATATGCTTGTCAGTTTGGTTACCCTACAAATTTATGATAATGACTTCATTGGTCAGCTGCCTCACAACATTTGTATTGGTGGAAACTTGAAATATTTGGCTGTTAAGAATAACCATTTCACTGGACCAGTTCCAAACAGTTTGAAGAATTGTACTAGTATTATAAGACTTAGGCTTGAACAAAATCAACTGAATGGAAATATAACAGAAGATTTTGGTGTTTatccaaatttgaatttcataCATTTAggtgaaaacaatttttatggaCACCTTTCTTCCAACTGGGGAAAGTGCCCTAACCTGACAAGCCTCAAcatttcaaataataatataagaggCGATATACCAGTAGAAATAGGCGAGGCGCGCAACTTGTATACGCTTGACTTATCTTCTAACCATCTCAAAGGAACAATTCCAAAGGAGTTAAGCAAATTGACTTTGTTGACCAACCTACTAATAAGCAACAACCATCTTTCAGGAAACATTCCTGTGCAAATAGCATCCTTAGATGAACTTGACACCTTAGACTTCGCAGGAAATAATCTAAGTGGCTTCATCACAAAAGAACTTGCAATTTTGTCCAATTTATGGAACTTAAATTTGAGCCAAAACAATTTCATAGGAAATATTCCTGTTGAGTTTGGACAATTTAAAATCCTTCGAAGTCTTGATCTAAGTGGAAATTTTTTGGATGGAACAATACCACAAATGCTTACAGAGTTGAAATACTTAGAAACATTGAATCTTGAACATAATAATCTTTCTGGCCTTATTCCTTCCAGCTTTGATCAGATGTCGAGCTTGACGTTTGTTGATATATCATATAACCAATTGGAGGGTCCACTCCCCAACATTCGAGCATTCAATAATGCTACAATTGAATTGTTGAGAAATAACAAAGGTTTGTGTGGTAATGTTTATGGCTTAGAGTCTTGTCCAACATCAAGAAGTGAATCTCATCATCATTCTCATCAGATTAGCAAAGTCTGGTTAATAGTCTTACCCCTTATTACGGTTGGAACTGTAATGCTAGCATTAATTTGCTATAAATTCTCATATCATCTCTTCCAAACATCAACCACCAATGATAATCAGGTTGGAGGGAACATCAATGTACTTCAAGATGTATTTACTATATGGAACTTTGATGGGAAAATTGTGTATGAGAACATTGTGGAAGCCACAGAAGAGTTTGATGACAAACATCTCATTGGAGTTGGAGGGCATGGAAGTGTCTACAAAGCTAAGTTGCAGACAGGTCAAGTAGTTGCTGTGAAAAAGCTCCATTCAGTAGCAAATGGGGGAAATTCCAATCTAAAATCATTCACAAATGAGATACAAACTCTGACCGAAATTCGACATCGCAATGTTGTGAAACTGTATGGATTTTGCTCACATTCACAATTGTCATTTTTGGTTTATGAGTTCATAGAGAAAGGTAGTTTGGAAAAGATTTTGATAGATGATGAACAAGCAATTGCATTTGATTGGAATAAGAGGGTGAATGTCATTAAAGATGTAGCTAATGCTTTATGCTATATGCATCATGATTGCTCAGTTCCAATTGTTCATCGAGATATCTCTAGCAAGAACATTCTTTTGGATTTGGAATGTGTGGCTCGTGTCTCTGACTTTGGAACAGCTAAGCTTCTAAATCTTAATTTAACCAACTCGACGTCATTTGCATTTACATTTGGATATGCTGCTCCAGAACTGGCATACACGACGAGAGTGAATGAGAAATGTGATGTGTATAGTTTTGGAGTGTTAGCATTGGAAATACTTTTTGGAAAACATCCTGGAGATGTTGTATCTTTATGGACTACCATTGGCTCTATACCTAATGCGATGCTACTAATGGATAAGTTGGACCAACGTCTTCCTCATCCTTTGAGTCCCATTATCGAGGAGTTAGTAACGATTGCAATGATAGCTTTTGCATGTTTGACCGAAAGTCCTCAATCTCGCCCTACCATGAAGCAGGTTTCGAAGGAGTTAGCAGGTTACCAATGA 3261 0.3481 MVFLFSNLRSMKLLSFWMLLSTCFCASTIATLQSREEASALLKWKSSLDNQSQTLLSSWSGNSSCNNWLGIKCDEDSIYVTYVNLTNMGLKGTLKSLNFTSLPNILTLDLSFNFLNGNIPNHIGMLSKLSHLDLSHNHLLGTIPYELTQLISLHTLYLDNNIFSSSIPKEIGALRNLRELSISSANLTGTIPTSIGNLTLLSHLNLAGNNLYGNIPKELWNLSNLNYLTVEVNKFNGFVFAQEILNLHKLETLDLGANGLSINGPILQDIWKLENLTYLSFQQCNVKGSIPFSIAKLTNLSYLNLAHNHIFGHIPIEIGKLSKLEYLYFFDNNLSGNIPVEIGGLVNIKALRFNDNNLSGSIPREIGMMKVAVQIDLNNNSLSGKIPPTIGNLSNMQQLTFAINYLNGKLPMEMNMLVSLVTLQIYDNDFIGQLPHNICIGGNLKYLAVKNNHFTGPVPNSLKNCTSIIRLRLEQNQLNGNITEDFGVYPNLNFIHLGENNFYGHLSSNWGKCPNLTSLNISNNNIRGDIPVEIGEARNLYTLDLSSNHLKGTIPKELSKLTLLTNLLISNNHLSGNIPVQIASLDELDTLDFAGNNLSGFITKELAILSNLWNLNLSQNNFIGNIPVEFGQFKILRSLDLSGNFLDGTIPQMLTELKYLETLNLEHNNLSGLIPSSFDQMSSLTFVDISYNQLEGPLPNIRAFNNATIELLRNNKGLCGNVYGLESCPTSRSESHHHSHQISKVWLIVLPLITVGTVMLALICYKFSYHLFQTSTTNDNQVGGNINVLQDVFTIWNFDGKIVYENIVEATEEFDDKHLIGVGGHGSVYKAKLQTGQVVAVKKLHSVANGGNSNLKSFTNEIQTLTEIRHRNVVKLYGFCSHSQLSFLVYEFIEKGSLEKILIDDEQAIAFDWNKRVNVIKDVANALCYMHHDCSVPIVHRDISSKNILLDLECVARVSDFGTAKLLNLNLTNSTSFAFTFGYAAPELAYTTRVNEKCDVYSFGVLALEILFGKHPGDVVSLWTTIGSIPNAMLLMDKLDQRLPHPLSPIIEELVTIAMIAFACLTESPQSRPTMKQVSKELAGYQ 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00803 1086 SUPERFAMILY RNI-like 375 701 - -
Tsu04g00803 1086 Pfam Protein kinase domain 815 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00803 1086 Gene3D Ribonuclease Inhibitor 238 416 IPR032675 -
Tsu04g00803 1086 Gene3D Ribonuclease Inhibitor 26 99 IPR032675 -
Tsu04g00803 1086 Pfam Leucine rich repeat 514 574 IPR001611 GO:0005515
Tsu04g00803 1086 Pfam Leucine rich repeat 636 694 IPR001611 GO:0005515
Tsu04g00803 1086 ProSiteProfiles Protein kinase domain profile. 814 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00803 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 177 - -
Tsu04g00803 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 272 1083 - -
Tsu04g00803 1086 ProSitePatterns Tyrosine protein kinases specific active-site signature. 938 950 IPR008266 GO:0004672|GO:0006468
Tsu04g00803 1086 ProSitePatterns Protein kinases ATP-binding region signature. 820 843 IPR017441 GO:0005524
Tsu04g00803 1086 SUPERFAMILY Protein kinase-like (PK-like) 800 1082 IPR011009 -
Tsu04g00803 1086 Gene3D Transferase(Phosphotransferase) domain 1 893 1086 - -
Tsu04g00803 1086 SMART LRR_typ_2 609 633 IPR003591 -
Tsu04g00803 1086 SMART LRR_typ_2 538 561 IPR003591 -
Tsu04g00803 1086 SMART LRR_typ_2 247 273 IPR003591 -
Tsu04g00803 1086 SMART LRR_typ_2 126 149 IPR003591 -
Tsu04g00803 1086 SMART LRR_typ_2 297 321 IPR003591 -
Tsu04g00803 1086 SMART LRR_typ_2 198 222 IPR003591 -
Tsu04g00803 1086 SMART LRR_typ_2 513 537 IPR003591 -
Tsu04g00803 1086 SMART LRR_typ_2 657 680 IPR003591 -
Tsu04g00803 1086 SMART LRR_typ_2 150 174 IPR003591 -
Tsu04g00803 1086 Gene3D Phosphorylase Kinase; domain 1 780 892 - -
Tsu04g00803 1086 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 173 273 - -
Tsu04g00803 1086 Gene3D Ribonuclease Inhibitor 100 237 IPR032675 -
Tsu04g00803 1086 Gene3D Ribonuclease Inhibitor 417 737 IPR032675 -
Tsu04g00803 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 173 273 - -
Tsu04g00803 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 177 - -
Tsu04g00803 1086 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 272 1083 - -
Tsu04g00803 1086 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Tsu04g00803 1086 SUPERFAMILY L domain-like 57 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00803 Tsu-Chr4 7716147 7719556 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00803 13 986 Receptor kinase-like Gene Family AT4G08850 40.992 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g00803 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00803 - - mtr:MTR_7g045710 1599.72