Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00802 ATGAACCTGAGATACGAACAGAGGCTTCAAGTCGCTGCTAAAATAATACTCGACGACGATGCAAGCACCGGCGATGCACCTCCGAGTGAAGAAGAGCTTGGGATTAGGGCAACACTTAAGCCTCACCAAGTTGAAGGGGTTTCATGGCTCACTCGGAGGTATAAACTTGGCGTTAACGTTGTTCTCGGGGATGAGATGGGATTGGGCAAGACACTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCACCAATTGTCACATGGGCCATTTTTGGTTATATGTCCTTTAAGTGTGACAGATGGTTGGGTATCTGAGATAGTCAAATATGCCCCGAAACTAGAAGTCCTTAAATATGTTGGTGATAAAGATTGTAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAGGCAGCCAACACATAATCAGGCCATTTTGCCTTTTGATGTGCTGTTAACATCATACGACATTGCACTGATGGATAAagattttctttctcaaatacCATGGCAGTATGCAATCATTGATGAAGCCCAAAGGCTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACGGTTGTTGATGACGGGCACACCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCGTCTGTCTTTGGGACACTAGATCAGTTCCTTTCTACATTCAGGGATATCAGTGATCTTACCTCAGCAGTTCATGATTCTCCAGAGGTAAAGGAGCGACTTCAAATCCTGAGAAGTGTATTGGCTGCCTTTATGCTACGTCGTACCAAATCAAAGCTTATGGAGTCTGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACAGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCTACATGTCGATACTGAGGAAAGAACTTCCGAAGCTAGTTGCACTATCTTCTGGAACATCAAATCACCAATCATTACAGAATACTGTATTACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAACCCGAACCTTATGAAGAAGGTGAACATCTGGTTCAGACCAGTGGTAAGCTATTGATTCTGGACCAACTTCTTAGAAAGCTGCACCATTATGGACATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTTTCTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGCAACTCATCAGCCAATACGAGCTTGAATTTTGAAGCTGACCAAAATGgagcttttgtttttatgatcTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCGCAGGTGGACAGACAAGCTTTGCAGAGAGCACATAGAATTGGGCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTCAATGTTACAGGTGATAATATTCTGGAACATGAAGATAAAAATTTATCTGAAGTTGGAACCAGTGACTTGAAATCCATCATAGTTGGGTTGCGTATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGAAATGGACTTAACAGAAATTAATGCAATGGCTGACAAGGTGATTGCTATTCgtgatgaaaaaatatttgataaggACGACAGGAAATTTGAGGTCAATCCTAGAAACTTTTTAAAAGGATATGATGTTAAGGAAAGAGGTTCTGCTTCTCTCTCTTGTGATCTTGATCTTGATGAGGCTTCTTATCTTTCTTGGGTCAAAAAATTTGAGGAAGTTTCTAAATCAAGTTGTGACTCAATCATTGACTTGAGAAGCAGAAGGAACTTAGATGAGGAAAAGAGTCAAAAACTTGAGATAGCAAAGAAGAAGGCAGAAGAAAAGAAGCTATCTAAGTGGAATGCTGCTGGATATCATTCATTGAATGTGGAAGAACCTATTAGCCCACCAGATGACGATATCATATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCCTCAAATGTTTCTTCATCTGAACCGGCTATAATTTTCAgCTGTGTTGACACCTCTGGACGTTGGGGCCATGGTGGAATGTTTGATGCACTAACTAAACTTTCATCAAGCATCAGTGAAGCATATGAACGGGCTTCTGAACACGGGGATCTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGTCTGTGATGATCAAAATTTGGATGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCAAAAGCAGCGTTCTCAGCTGCTCAAAATTCTGCATCAATTCACATGCCACGGATTGGTTATCAAGATGGATCTGATCGTTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACATAAGTATATACGTGTATTATTATCGAAAATCACGTTAA 2643 0.4022 MNLRYEQRLQVAAKIILDDDASTGDAPPSEEELGIRATLKPHQVEGVSWLTRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVHQLSHGPFLVICPLSVTDGWVSEIVKYAPKLEVLKYVGDKDCRRSLRMKTHEHVTRQPTHNQAILPFDVLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFRDISDLTSAVHDSPEVKERLQILRSVLAAFMLRRTKSKLMESGSLVLPPLTETTVLVPLVSLQKKVYMSILRKELPKLVALSSGTSNHQSLQNTVLQLRKACSHPYLFPGIEPEPYEEGEHLVQTSGKLLILDQLLRKLHHYGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSNSSANTSLNFEADQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDRQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKNLSEVGTSDLKSIIVGLRMFDPNEINDGKDKEMDLTEINAMADKVIAIRDEKIFDKDDRKFEVNPRNFLKGYDVKERGSASLSCDLDLDEASYLSWVKKFEEVSKSSCDSIIDLRSRRNLDEEKSQKLEIAKKKAEEKKLSKWNAAGYHSLNVEEPISPPDDDIILDAGSVHFVYGDCTAPSNVSSSEPAIIFSCVDTSGRWGHGGMFDALTKLSSSISEAYERASEHGDLHLGDLHLIRLEDVCDDQNLDGNAPKMVALAVVQSYNPRRKVPRSEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASMYNISIYVYYYRKSR 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00802 880 Pfam SNF2-related domain 57 347 IPR000330 GO:0005524|GO:0140658
Tsu04g00802 880 SMART ultradead3 35 236 IPR014001 -
Tsu04g00802 880 SMART helicmild6 397 492 IPR001650 -
Tsu04g00802 880 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 539 IPR001650 -
Tsu04g00802 880 CDD Macro_Poa1p-like_SNF2 707 865 - -
Tsu04g00802 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 282 542 IPR027417 -
Tsu04g00802 880 CDD SF2_C_SNF 360 503 - -
Tsu04g00802 880 PANTHER HELICASE CHR10-RELATED 4 875 - -
Tsu04g00802 880 Gene3D - 286 597 IPR027417 -
Tsu04g00802 880 Pfam Helicase conserved C-terminal domain 368 492 IPR001650 -
Tsu04g00802 880 Gene3D Leucine Aminopeptidase, subunit E, domain 1 707 880 IPR043472 -
Tsu04g00802 880 SUPERFAMILY Macro domain-like 708 875 IPR043472 -
Tsu04g00802 880 Gene3D - 17 285 IPR038718 -
Tsu04g00802 880 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 4 875 - -
Tsu04g00802 880 Coils Coil 655 675 - -
Tsu04g00802 880 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 228 IPR014001 -
Tsu04g00802 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 274 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00802 Tsu-Chr4 7700971 7714685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00802 4 551 RAD5 or RAD16-like Gene Family AT1G02670 24.921 1.70e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu04g00802 SNF2_N 4e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00802 K20092 - gmx:100797182 1383.24