Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00796 ATGGCACGTTCACGGTCCACCGCGCAGCGCCTCCTATATGCACTCcgctccaccaccaccactaccaCCACAGTCTCTCCATCTCCAACAACCTCCCTAATCGGCGGCACTTTCCACCTCCGACACTTCTCAGCCGGGAACGTTGCTCGCGCAAAGGCAGCTACAATTGATAAGGATCCATGGTGGAAGGAATCAATGGAAATGACTCGTAACATCGGGATCTCAGCACATATCGATTCCGGGAAGACGACGTTGACAGAACGGATACTTTTTTATACCGGTCGTATCCATGAGATTCATGAGGTGAGGGGAAAGGATGGCGTTGGTGCTAAGATGGATTCTATGGATTTGGAGAGAGAAAAGGGAATTACTATTCAATCTGCTGCTACTTATTGCACTTGGAAAGACTATAAGGTCAACATAATTGACACACCTGGTCATGTTGATTTCACCATTGAGGTTGAGAGGGCTTTACGTGTCCTTGATGGTGCCATTCTTGTTTTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGGCAAATGAAAAGATATGAGGTTCCAAGACTTGCATTTATCAACAAGCTTGATCGAATGGGAGCAGATCCGTGGAAAGTTTTAAATCAGGCTAGATCTAAGCTTCGCCATCATAGTGCTGCGATTCAAGTTCCAATAGGTTTGGAAGAAGATTTTAAGGGACTCATTGATCTTGTGAAGTTAAAGGCCTATTATTTTCATGGTCCAAATGGTGACAAAATTGAAATCGAAGAAGTGCCTTCAGATATGGAAGCCTTGGTGGCAGAAAAAAGACATGAACTAATAGAAACTGTGTCAGAGGTTGATGATATACTTGCTGAAGCGTTTCTTAGCGATGAGCCCATTTCAGATGCTGATCTTGAGGGAGCAATTCGTAGGGCTACCATGGCGCGGAAATTTATCCCGGTATTCATGGGTAGTGCTTTCAAAAACAAGGGGATACAGCCACTTCTGGATGGTGTACTTAGTTATTTGCCATGTCCAATTGAAGTTAATAATTATGCTCTTGATCAATCTAACAGCGAGGAGAAGGTTGAGCTGACTGGAAATCCTGATGGGCCACTTGTAGCATTGGCTTTCAAGTTGGAGGAAGGCAAATTTGGTCAGTTAACATATTTAAGAATTTATGAGGGCGTCATTAAGAAGGGTGATTCCGTTATTAATGTTAACACTGGCAAGAAGACCAAGATTCCTCGATTGATTCGGATGCATTCTAATGAGATGGAGGACATTCAAGAGGCCCATGCTGGCCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGGTCGGTTAAATACACAATGACTTCTATGAGTGTTCCCGAGCCCGTGATGTCATTAGCTGTGCAGCCAGTCTCAAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAACCGCTTCCAAAGAGAGGATCCTACTTTCCGTGTTGGCTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTAGATATTTATGTTGAACGCATTAGGAGGGAGTACAAGGTTGATGCTTCAGTCGGAAAGCCACGTGTAAACTTCAGAGAAACTGTTACTCAACGTGCCGATTTTGATTATTTACATAAGAAGCAAAGTGGAGGCCAAGGACAATATGGACGGGTGATTGGGTATATTGAACCACTTCCTGCTGGGTCGGGAActaagtttgaatttgaaaacaTGCTTGTTGGTCAAGCTGTTCCATCAAATTTTATCCCTGCAATTGAGAAAGGTTTTAAAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTAGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGTGAACTTGCGTTTAAGATGGCTTCTATCTATGCTTTTAGACAGTGTTATGCAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGATCTCAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAGGACGGAGATGACTCTGTCATTACAGCTCATGTCCCTCTTAACAATATGTTTGGGTATTCTACATCTCTTCGTTCGATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAGGAACATTCACCAGTTTCTCATGATGTACAAACCCAATTGATAAACACATACAAGGGCAATAAGGCGGCGGATGAATGA 2280 0.4259 MARSRSTAQRLLYALRSTTTTTTTVSPSPTTSLIGGTFHLRHFSAGNVARAKAATIDKDPWWKESMEMTRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGKDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMKRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAIQVPIGLEEDFKGLIDLVKLKAYYFHGPNGDKIEIEEVPSDMEALVAEKRHELIETVSEVDDILAEAFLSDEPISDADLEGAIRRATMARKFIPVFMGSAFKNKGIQPLLDGVLSYLPCPIEVNNYALDQSNSEEKVELTGNPDGPLVALAFKLEEGKFGQLTYLRIYEGVIKKGDSVINVNTGKKTKIPRLIRMHSNEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMSVPEPVMSLAVQPVSKDSGGQFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIEPLPAGSGTKFEFENMLVGQAVPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDLNKRKGVIVGNDQDGDDSVITAHVPLNNMFGYSTSLRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGNKAADE 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00796 759 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 3 757 - -
Tsu04g00796 759 CDD EFG_mtEFG1_IV 541 656 IPR005517 GO:0005525
Tsu04g00796 759 Gene3D Elongation Factor G (Translational Gtpase), domain 3 469 542 - -
Tsu04g00796 759 SUPERFAMILY EF-G C-terminal domain-like 660 752 IPR035647 -
Tsu04g00796 759 SMART EFG_C_a 660 747 IPR000640 -
Tsu04g00796 759 CDD EFG_III 463 538 IPR009022 -
Tsu04g00796 759 Gene3D - 664 734 - -
Tsu04g00796 759 Hamap Elongation factor G [fusA]. 65 751 IPR004540 GO:0003746|GO:0005525|GO:0006414
Tsu04g00796 759 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 67 344 IPR000795 GO:0003924|GO:0005525
Tsu04g00796 759 SUPERFAMILY Translation proteins 308 460 IPR009000 -
Tsu04g00796 759 TIGRFAM small_GTP: small GTP-binding protein domain 69 241 IPR005225 GO:0005525
Tsu04g00796 759 Gene3D - 543 748 IPR014721 -
Tsu04g00796 759 TIGRFAM EF-G: translation elongation factor G 65 752 IPR004540 GO:0003746|GO:0005525|GO:0006414
Tsu04g00796 759 Pfam Elongation factor G C-terminus 661 746 IPR000640 -
Tsu04g00796 759 Pfam Elongation factor Tu domain 2 383 449 IPR004161 GO:0005525
Tsu04g00796 759 SMART EFG_IV_2 538 658 IPR005517 GO:0005525
Tsu04g00796 759 SUPERFAMILY EF-G C-terminal domain-like 460 537 IPR035647 -
Tsu04g00796 759 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 113 128 IPR031157 -
Tsu04g00796 759 Pfam Elongation factor G, domain IV 537 657 IPR005517 GO:0005525
Tsu04g00796 759 PRINTS GTP-binding elongation factor signature 140 150 IPR000795 GO:0003924|GO:0005525
Tsu04g00796 759 PRINTS GTP-binding elongation factor signature 120 128 IPR000795 GO:0003924|GO:0005525
Tsu04g00796 759 PRINTS GTP-binding elongation factor signature 71 84 IPR000795 GO:0003924|GO:0005525
Tsu04g00796 759 PRINTS GTP-binding elongation factor signature 192 201 IPR000795 GO:0003924|GO:0005525
Tsu04g00796 759 PRINTS GTP-binding elongation factor signature 156 167 IPR000795 GO:0003924|GO:0005525
Tsu04g00796 759 Pfam Elongation factor Tu GTP binding domain 69 341 IPR000795 GO:0003924|GO:0005525
Tsu04g00796 759 Gene3D Translation factors 351 468 - -
Tsu04g00796 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 341 IPR027417 -
Tsu04g00796 759 SUPERFAMILY Ribosomal protein S5 domain 2-like 537 659 IPR020568 -
Tsu04g00796 759 CDD mtEFG1_C 663 740 IPR035649 -
Tsu04g00796 759 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 3 757 IPR045044 -
Tsu04g00796 759 CDD mtEFG1_II_like 370 450 - -
Tsu04g00796 759 Pfam Elongation Factor G, domain III 462 536 IPR041095 -
Tsu04g00796 759 Gene3D - 62 347 IPR027417 -
Tsu04g00796 759 CDD EF-G 71 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00796 Tsu-Chr4 7621638 7635282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00796 385 545 Eukaryotic Initiation Factors Gene Family AT3G22980 23.034 2.94e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00796 K02355 - gmx:100783315 1353.96