Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00793 ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAATAATACTAACACTAACGGTAACAGTAACGGTTTTACTACTTGGGGTAGTACTAGTAGTGGTGGTAGTACTACTGCATGGAACATAGATATGTTCCATGTTTCTGATGAAAACACCACTGCCGTTACTGCTGTGAATCATCACGATGCTGATTTAAGCAACGTGATGATGTTTAACGGCGGTGGTGGAAGACAGCATAGAGGGAGCTATGCTGAACCATATGGAGGAGGTGGGTCAAGGTCTCACCTGATGCCTGACCCACATCTCACGTGTTTGAAGTTAGGGAAGAGACATTATTTTGAGGATGttaatggtggtggtggtggtgtggGGTTGGGAGATAAGAGAGGGAAagggtattgtggtggtggtggtgggaaGGTGGCTGCTGCGGCGGCGGGGTTTGCGGTGGCGAGGTGTCAGGTAGATGGATGCCACGTGGCATTGACGAGTGCTAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCGAAGGCACCAAAAGTTGTGGTTTTGGGTTTAGAGCAAAGATTCTGCCAGCAGTGTAGCAGGTTCCATGTTGTGTCGGAGTTTGATGATTCAAAGAGAAGTTGTAGAAGGAGACTTGCAGGGCAcaatgagagaagaagaaagagctCCCATGATTCTGTTGCGAGGAATTCCTCACATGGTGGGTGTGCTCTCTCTCTTCTGTCATCTAGGACTGATTCTTGGCTTTCACCTGCTGATCTATCCGTAAGATGCAGTGCTGCGTTAAGCGAATTGATAGCAGAAAATCGGGCAGCAATCATGGCTAGGCAATATGTCTCAGATAGAGACTGGCATTCGCACTACCATGCCGTGGAAGACTACAGGGAGATCCAGCCCGAGTCGAATTATTTCCCACAACAAATGTTTCCTCAGACTCACTAG 963 0.4361 MDFGGNMFCLNNRDQNNTNTNGNSNGFTTWGSTSSGGSTTAWNIDMFHVSDENTTAVTAVNHHDADLSNVMMFNGGGGRQHRGSYAEPYGGGGSRSHLMPDPHLTCLKLGKRHYFEDVNGGGGGVGLGDKRGKGYCGGGGGKVAAAAAGFAVARCQVDGCHVALTSAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSHGGCALSLLSSRTDSWLSPADLSVRCSAALSELIAENRAAIMARQYVSDRDWHSHYHAVEDYREIQPESNYFPQQMFPQTH 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00793 320 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677|GO:0005634
Tsu04g00793 320 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 36 320 - -
Tsu04g00793 320 MobiDBLite consensus disorder prediction 219 239 - -
Tsu04g00793 320 Pfam SBP domain 155 228 IPR004333 GO:0003677
Tsu04g00793 320 Gene3D - 146 216 IPR036893 GO:0003677|GO:0005634
Tsu04g00793 320 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677
Tsu04g00793 320 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 36 320 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00793 Tsu-Chr4 7602190 7606481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00793 106 228 SBP-box Gene Family AT1G27360 56.098 1.21e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu04g00793 SBP 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00793 - - cam:101496293 402.134