Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00788 ATGCATGGCTTAGGGATACCGAAAGTGCCGGTTAAACCACCTTCAACAACCGCAACAAACAATCCCTCCAAGGAAACTTGGGAAAAGCCCGCTCGTGCGAGTGGCACTTTGGAGTCCATAGTAAACCAAGCAACTAGCTTTCCACACCGTGGAAAATCACCCTTTTTAGCCGGTGGTGGTGTCTACGGGAACATGTTAGTCCCATGGCTTGACCCACATCGCGCTGCAGCCATCGCTGCCGCTGCCAACGGCCTATCTGTTGATGCGTTGGTTCCTTGCTCCAATACCACCAAGGAGCAAAGAAGTCAGGCAATGGATCCAATCTCTAGAGGAGGGATTGGATCATGCATGGCTGGTGGCCCTACCCCTGTAGGGTCATGTAGCGCTGTCGTGGCCGCAACACACGAGGAAGGTGGACTCCTTGTTGCGGCTACGGCAAAGCGTGGAAGGGTGGCACACGTGGCGGGGAGCGGTAGGGATCAAAGTATGAGTAACAGCGCAACTTTTGGGAGGCAAAGTCAGCAAGTTACCTTAGATACATACGACAGGGAATTTGGTAAGACTGGTTTCACTTCAACTTCAATAGCATCAATGGATAATACAAGCTCTGAGAAACAGTGCACCAGGACCACCACCATAGATGACCATGATTCTGTTTGCCACAGCAGACCAACAAGGGAGGATGCTGACGAGGatgagaaaaaaagagaaaatcgAAAATCATCCGTGTCCACAAAAAGGAGTAGAGCTGCAGCTATTCACAACCAATCTGAAAGGAAAAGAAGGGATAAGATAAATCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACCGATAAAGCTTCAATGTTGGACGAAGTGATCGAATATCTAAAACAATTGCAAGCACAAGTGCACATGGTGAATAGATTCAACATGTCATCGATGATGATGCCGATGACCATGCAGCAACAACTTCAAATGTCGATGATGAATCCAATGGGTATGGGAATGGGGATGGGTATGGCCGGGATGGGCATGGGTATGGGAATGCCGGGCATGGGAATGGATATGAACACCATGAATCGAGCTAACATGCCCGGAATGCCGCCCGTTCTCCACCCTTCTGCATTCATGCCTATGGCTTCATGGGATGGTGTAGGCAGTAGCGACCGACTTCAAGGACCTCCACCAACCGGGATGGCTGACCCTCTCTCCACATTTTTTGGATGTCAATCGCAGCCCATGACTATGGATGCCTATAGTAGAATTGCTGCCATGTATCAGCAGATGCAACAACAACCACCTCAAGGAGCACCAGGTTCAAAGAGTTGA 1326 0.4872 MHGLGIPKVPVKPPSTTATNNPSKETWEKPARASGTLESIVNQATSFPHRGKSPFLAGGGVYGNMLVPWLDPHRAAAIAAAANGLSVDALVPCSNTTKEQRSQAMDPISRGGIGSCMAGGPTPVGSCSAVVAATHEEGGLLVAATAKRGRVAHVAGSGRDQSMSNSATFGRQSQQVTLDTYDREFGKTGFTSTSIASMDNTSSEKQCTRTTTIDDHDSVCHSRPTREDADEDEKKRENRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVHMVNRFNMSSMMMPMTMQQQLQMSMMNPMGMGMGMGMAGMGMGMGMPGMGMDMNTMNRANMPGMPPVLHPSAFMPMASWDGVGSSDRLQGPPPTGMADPLSTFFGCQSQPMTMDAYSRIAAMYQQMQQQPPQGAPGSKS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00788 441 MobiDBLite consensus disorder prediction 155 175 - -
Tsu04g00788 441 MobiDBLite consensus disorder prediction 158 175 - -
Tsu04g00788 441 SMART finulus 255 304 IPR011598 GO:0046983
Tsu04g00788 441 MobiDBLite consensus disorder prediction 13 27 - -
Tsu04g00788 441 MobiDBLite consensus disorder prediction 191 208 - -
Tsu04g00788 441 Coils Coil 255 275 - -
Tsu04g00788 441 Pfam Helix-loop-helix DNA-binding domain 254 299 IPR011598 GO:0046983
Tsu04g00788 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 249 298 IPR011598 GO:0046983
Tsu04g00788 441 MobiDBLite consensus disorder prediction 209 244 - -
Tsu04g00788 441 MobiDBLite consensus disorder prediction 191 264 - -
Tsu04g00788 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 247 312 IPR036638 GO:0046983
Tsu04g00788 441 CDD bHLH_AtPIF_like 249 304 - -
Tsu04g00788 441 MobiDBLite consensus disorder prediction 1 32 - -
Tsu04g00788 441 Gene3D - 244 309 IPR036638 GO:0046983
Tsu04g00788 441 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 433 IPR031066 -
Tsu04g00788 441 PANTHER TRANSCRIPTION FACTOR UNE10 1 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00788 Tsu-Chr4 7554056 7561579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00788 1 419 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 43.427 4.21e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g00788 HLH 6.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00788 - - mtr:MTR_7g039110 481.1