Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00786 ATGGCTCTTACACTTGAACGTGCATTCTTTAATATACTTATCCTTGTAGTTTCACTTTCAATATTAGTGACACCTTCCTCTTGTTTTAATCCAAGGAAGCTTGTTAATTTaacttcatattcttcatctgattcagattggTCACCTTCAGTGGCTACTTGGTATGGAGAAGCCAATGGAGATGGAAGTGAagGTGGTGCATGTGGATATCAAACTGCTGTTGGGCAACCACCATTCTCTTCAATGATATCGGCCGGAAGCCCCGCCATCTATGACTCAGGCAAAGGTTGCGGTTCTTGTTACGAGGTGAAGTGTACTGGAAATTCTGCATGTTCAGGGAACCCTGTGAGGGTAGTTATCACTGATGAGTGTGCTGGTTGTGGCTCAGATGCTCAATATCATTTTGATTTAAGTGGCAGTGCGTTTGGGTCAATGGCAATTTCAGGTGAAGATCAACAACTACGCAATGCTGGAAAAATAGACATGGAACATAGAAGagTTGAATGCAACTATGGTAGATCAATAGCTTTTCATGTGGACTCTGGATCCAATCAACAATACTTTGCTGCCTTGATTGAATATGAGAATGGAGATGGTGATCTTAATAGAGTTGAACTCAAGGAAGCACTTGATTCTTCCACTTGGGATTCTATGCAACAATCATGGGGTGCTGTTTGGAAATTTGATAAAGGAGCACCATTAAAAGCACCATTTTCTATTAAGCTAACTACACTTGAATCTGGCAAGACTATTGTGGCAGAAAATGTGATTCCTGCAGGTTGGAAGCCTGGTCAAACTTATAGATCAATTGTGAATTTTTAA 822 0.3905 MALTLERAFFNILILVVSLSILVTPSSCFNPRKLVNLTSYSSSDSDWSPSVATWYGEANGDGSEGGACGYQTAVGQPPFSSMISAGSPAIYDSGKGCGSCYEVKCTGNSACSGNPVRVVITDECAGCGSDAQYHFDLSGSAFGSMAISGEDQQLRNAGKIDMEHRRVECNYGRSIAFHVDSGSNQQYFAALIEYENGDGDLNRVELKEALDSSTWDSMQQSWGAVWKFDKGAPLKAPFSIKLTTLESGKTIVAENVIPAGWKPGQTYRSIVNF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00786 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 65 174 IPR007112 -
Tsu04g00786 273 PANTHER EXPANSIN-B2-RELATED 10 273 - -
Tsu04g00786 273 SMART dpbb_1 83 164 IPR007112 -
Tsu04g00786 273 PANTHER EXPANSIN-B3 10 273 - -
Tsu04g00786 273 Pfam Lytic transglycolase 84 162 IPR009009 -
Tsu04g00786 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Tsu04g00786 273 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576|GO:0019953
Tsu04g00786 273 PRINTS Major pollen allergen Lol pI signature 85 96 IPR005795 GO:0005576|GO:0019953
Tsu04g00786 273 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576|GO:0019953
Tsu04g00786 273 PRINTS Major pollen allergen Lol pI signature 105 115 IPR005795 GO:0005576|GO:0019953
Tsu04g00786 273 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576|GO:0019953
Tsu04g00786 273 PRINTS Major pollen allergen Lol pI signature 245 262 IPR005795 GO:0005576|GO:0019953
Tsu04g00786 273 Gene3D - 171 273 IPR036749 -
Tsu04g00786 273 Pfam Expansin C-terminal domain 175 258 IPR007117 -
Tsu04g00786 273 Gene3D - 32 170 IPR036908 -
Tsu04g00786 273 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576
Tsu04g00786 273 PRINTS Expansin/Lol pI family signature 46 61 IPR007118 GO:0005576
Tsu04g00786 273 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Tsu04g00786 273 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Tsu04g00786 273 PRINTS Expansin/Lol pI family signature 87 105 IPR007118 GO:0005576
Tsu04g00786 273 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Tsu04g00786 273 SUPERFAMILY Barwin-like endoglucanases 36 171 IPR036908 -
Tsu04g00786 273 SUPERFAMILY PHL pollen allergen 173 269 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00786 Tsu-Chr4 7525346 7527535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00786 26 273 Expansin Gene Family AT1G65680 60.643 4.36e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00786 - - gmx:548090 466.463