Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00785 atGGCTCTTACATATCAATATGCATTCTCTCATATACTCATCGTTGTAGTTCCACTCTTAATATTTCTAGTGACCCCTTCCTCTTGTCTTAATACTAGGAAGATTCTTAATGTTACTTCAAACTCCTCATCTGATTTAGCTTTTGGATTATCTTCATCACTAGCCTCTTTTTATGGACCTCCCAATGGTGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAAATGCTGTCGGACTACCTCCGTTCAATTCAATGATATCGGCCGGAGGCCCTGCCCTTTTCAAGGGTGGCAAAGGATGTGGCACTTGTTATCAGGTCTACTGA 324 0.4198 MALTYQYAFSHILIVVVPLLIFLVTPSSCLNTRKILNVTSNSSSDLAFGLSSSLASFYGPPNGDGSEGGACGYGNAVGLPPFNSMISAGGPALFKGGKGCGTCYQVY 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00785 107 Gene3D - 33 107 IPR036908 -
Tsu04g00785 107 PANTHER EXPANSIN-B3 16 106 - -
Tsu04g00785 107 PRINTS Expansin/Lol pI family signature 90 107 IPR007118 GO:0005576
Tsu04g00785 107 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Tsu04g00785 107 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Tsu04g00785 107 PANTHER EXPANSIN-B2-RELATED 16 106 - -
Tsu04g00785 107 SUPERFAMILY Barwin-like endoglucanases 49 106 IPR036908 -
Tsu04g00785 107 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 107 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00785 Tsu-Chr4 7508768 7509200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00785 34 106 Expansin Gene Family AT1G65680 57.534 4.82e-24 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00785 - - cam:101502552 126.331