Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00782 ATGGCAATTTTAGGTCAAGCTGACAAGCTACGCAATGCCGGGAAAGTTACCGTTCAATATAGAAGAGTTCCATGCAACTATCCTGGTGTGTCAATTGCTTTCCGTGTAGACCTTGGAACTAATCCATATTATTTTGCTACCTTAATAGAATATTTGAATGGGGATGGTGATCTCAAAACAGTTGAAATCAAAGAAGCAAACTCAGCAACTTGGAAAGCCATGCAAGAATCAGTTGGTGCTGTTtggaaattaaataaaggaGCACCAATGAGAGCACCATTTTCTATTAGGCTAACCACAATTGAGTCTGGCAAAGTATTTGTTGCCAATAATGTGATCCCTTTGGGTTATAAGCCAGGTCAAACTTATAGAGCATTTGGAAATTTTCATTAA 393 0.3715 MAILGQADKLRNAGKVTVQYRRVPCNYPGVSIAFRVDLGTNPYYFATLIEYLNGDGDLKTVEIKEANSATWKAMQESVGAVWKLNKGAPMRAPFSIRLTTIESGKVFVANNVIPLGYKPGQTYRAFGNFH 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00782 130 SUPERFAMILY PHL pollen allergen 32 124 IPR036749 -
Tsu04g00782 130 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 43 125 IPR007117 -
Tsu04g00782 130 PRINTS Expansin/Lol pI family signature 13 29 IPR007118 GO:0005576
Tsu04g00782 130 PRINTS Expansin/Lol pI family signature 111 125 IPR007118 GO:0005576
Tsu04g00782 130 PRINTS Expansin/Lol pI family signature 71 85 IPR007118 GO:0005576
Tsu04g00782 130 PANTHER EXPANSIN-B2-RELATED 1 129 - -
Tsu04g00782 130 Pfam Expansin C-terminal domain 32 114 IPR007117 -
Tsu04g00782 130 Gene3D - 29 127 IPR036749 -
Tsu04g00782 130 PRINTS Major pollen allergen Lol pI signature 50 65 IPR005795 GO:0005576|GO:0019953
Tsu04g00782 130 PRINTS Major pollen allergen Lol pI signature 80 97 IPR005795 GO:0005576|GO:0019953
Tsu04g00782 130 PRINTS Major pollen allergen Lol pI signature 34 49 IPR005795 GO:0005576|GO:0019953
Tsu04g00782 130 PRINTS Major pollen allergen Lol pI signature 2 17 IPR005795 GO:0005576|GO:0019953
Tsu04g00782 130 PANTHER EXPANSIN-B3 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00782 Tsu-Chr4 7474479 7475010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00782 1 129 Expansin Gene Family AT1G65680 48.462 1.00e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00782 - - cam:101502232 183.726