Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00781 ATGGCTCTTACATATGGACATGCATTCTCTCATATACTCATATTTGTATCACTCTCAATATTCCTAGTGATCCCTTCCTCATGTCTTAATCCTAGGAAGTTTCTTAATGTCACTTCATATTCCTCATTTGATTCAGCTTATCAATCATCTTCATTGGCCACTTTTTATGGTCCTCCATATGGTGATGGAAGTGAAGgTGGTGCATGCGGATATGGAAAGGCTGTTGGGCAACCTCCCTTCAATTCAATGATATCGGCCGGAGGCCCTGCCATTTTCAAGCGAGGCAAGGGTTGTGGGACTTGTTATCAGGTGAGGTGCGTAGGGAATCAAGCATGCTCAGGAAACCCTGTTACAATAGTTATCACTGATGAGTGCCCTGGttgtaattataattttgatatgaGTGGCAAAGCTTTTGGTGCCATGGCAATATCAGGTCATGGTGACCAGCTACGCAATGCTGGGAAAGTTACGGTTCAATATAGAAGAGTTGCATGCAACTACCCTGGTGTGTCAATAGCTTTTCGTGTGGACCTTGGAACGAATCCATATTATTTTGCTACCTTAATAGAATATGAGGATGGAGATGGTGATCTCAAAACAGTTGAAATCAAAGAAGCAAACTCAGCAACTTGGGAAACCATGCAAGAATCAGTTGGTGCTGTTtggaaattaaataaaggaGCACCAATGAAAGCACCATTTTCTATTAGGTTAACCACAATTGAGTCTGGCAAGGTATTTGTTGCCAATAATGTGATCCCCGTAGGTTATAAGCCTGGTCAAACTTATAGAGCAGTTGCATCACTCTCAATAATATTCCTAGTAACCCCTTCATCTTGTCTTAAACCTAGGAAGCTTCTTAATCTCACTTCATACTCCTTATCCGAGTCAGATTCTTCTACAATGGCTACATTTTATGGACCTCCCAACGGTGATGGAAGTGAAAGTGGTGCTTGTGGATATGGAAAGAGAGTTGGGCTGCCTCCATTCAACTCAATGATATCGGCAGGAAACCATGTCATCTTTGCATCAGGAAAAGGGTGTGGCTCTTGTTATCAGTTGAAGTGCACTGGAAATCCTTCTTGCTCAAGCAACCCTATTACTGTAGTTATCACTGATTTTTGTCCTGAATGTGttcattattttgatttgagtGGTAAAGCTTTTGGTTCCATGGCAATTTCTGGTCAAGCTGACAAGCTACGTATTGCGGGAAAAGTTCCCGTTCAATATAATAGaGTTGCATGCAAGTACCCTGGTGTATCAATAACTTTTAGTGTGGACTCCGGatctaatcaaaattattttgctaCCGTCATTGAATATGAGGATGGTGATGGTGATCTCAAAACGGTTGAAATCAAAGAAGCACTTAGCTCAGCAAATTGGGAAACTATGCAACAATCATGGGGTGCTGTTTGGAAAATTAATAAAGGGGCACCTTTGAGAGCACCATTTTCAATTAGGTTAACTACAATTGAGTCTGGGAAAGTATTTGTTGCCAATAATGTGATCCCTGCAGGTTGGAAGCCTGGTCAAACTTATAGAGCAATTGGAAATTTCAACTAG 1572 0.3989 MALTYGHAFSHILIFVSLSIFLVIPSSCLNPRKFLNVTSYSSFDSAYQSSSLATFYGPPYGDGSEGGACGYGKAVGQPPFNSMISAGGPAIFKRGKGCGTCYQVRCVGNQACSGNPVTIVITDECPGCNYNFDMSGKAFGAMAISGHGDQLRNAGKVTVQYRRVACNYPGVSIAFRVDLGTNPYYFATLIEYEDGDGDLKTVEIKEANSATWETMQESVGAVWKLNKGAPMKAPFSIRLTTIESGKVFVANNVIPVGYKPGQTYRAVASLSIIFLVTPSSCLKPRKLLNLTSYSLSESDSSTMATFYGPPNGDGSESGACGYGKRVGLPPFNSMISAGNHVIFASGKGCGSCYQLKCTGNPSCSSNPITVVITDFCPECVHYFDLSGKAFGSMAISGQADKLRIAGKVPVQYNRVACKYPGVSITFSVDSGSNQNYFATVIEYEDGDGDLKTVEIKEALSSANWETMQQSWGAVWKINKGAPLRAPFSIRLTTIESGKVFVANNVIPAGWKPGQTYRAIGNFN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00781 523 Gene3D - 418 518 IPR036749 -
Tsu04g00781 523 SUPERFAMILY Barwin-like endoglucanases 44 170 IPR036908 -
Tsu04g00781 523 SUPERFAMILY PHL pollen allergen 424 517 IPR036749 -
Tsu04g00781 523 SMART dpbb_1 84 161 IPR007112 -
Tsu04g00781 523 SMART dpbb_1 335 412 IPR007112 -
Tsu04g00781 523 Gene3D - 170 269 IPR036749 -
Tsu04g00781 523 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 266 IPR007117 -
Tsu04g00781 523 PRINTS Expansin/Lol pI family signature 316 334 IPR007118 GO:0005576
Tsu04g00781 523 PRINTS Expansin/Lol pI family signature 464 478 IPR007118 GO:0005576
Tsu04g00781 523 PRINTS Expansin/Lol pI family signature 504 518 IPR007118 GO:0005576
Tsu04g00781 523 PRINTS Expansin/Lol pI family signature 405 421 IPR007118 GO:0005576
Tsu04g00781 523 PRINTS Expansin/Lol pI family signature 298 313 IPR007118 GO:0005576
Tsu04g00781 523 PRINTS Expansin/Lol pI family signature 339 357 IPR007118 GO:0005576
Tsu04g00781 523 Gene3D - 290 417 IPR036908 -
Tsu04g00781 523 Gene3D - 33 167 IPR036908 -
Tsu04g00781 523 PRINTS Major pollen allergen Lol pI signature 473 490 IPR005795 GO:0005576|GO:0019953
Tsu04g00781 523 PRINTS Major pollen allergen Lol pI signature 426 441 IPR005795 GO:0005576|GO:0019953
Tsu04g00781 523 PRINTS Major pollen allergen Lol pI signature 337 348 IPR005795 GO:0005576|GO:0019953
Tsu04g00781 523 PRINTS Major pollen allergen Lol pI signature 442 457 IPR005795 GO:0005576|GO:0019953
Tsu04g00781 523 PRINTS Major pollen allergen Lol pI signature 357 367 IPR005795 GO:0005576|GO:0019953
Tsu04g00781 523 PRINTS Major pollen allergen Lol pI signature 394 409 IPR005795 GO:0005576|GO:0019953
Tsu04g00781 523 PANTHER EXPANSIN-B3 278 522 - -
Tsu04g00781 523 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Tsu04g00781 523 PANTHER EXPANSIN-B3 8 281 - -
Tsu04g00781 523 SUPERFAMILY Barwin-like endoglucanases 294 421 IPR036908 -
Tsu04g00781 523 Pfam Lytic transglycolase 336 412 IPR009009 -
Tsu04g00781 523 Pfam Lytic transglycolase 85 161 IPR009009 -
Tsu04g00781 523 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 317 422 IPR007112 -
Tsu04g00781 523 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
Tsu04g00781 523 PANTHER EXPANSIN-B2-RELATED 8 281 - -
Tsu04g00781 523 Pfam Expansin C-terminal domain 424 507 IPR007117 -
Tsu04g00781 523 Pfam Expansin C-terminal domain 173 255 IPR007117 -
Tsu04g00781 523 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 435 518 IPR007117 -
Tsu04g00781 523 PANTHER EXPANSIN-B2-RELATED 278 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00781 Tsu-Chr4 7462034 7468237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00781 279 522 Expansin Gene Family AT1G65680 53.226 4.53e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00781 - - bdi:100836606 486.108