Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00779 ATGAGATCTCACATGATGAATCTTCTTGTTACCAAACCAGAAGAAGATTCATCACGAACGATTCAACTTAGTTTTGAAGCTGAATCAGCACCATCTTCATCGTCATCAGAAGATGATGACGACGATGATAAGGGTCTAAGTTATGGCCTTAGAGAAAATCCAAAGAGAAGCATTCGTCTCGTCGATCAAGACTTTTCTTTTCCACAAGTTGATGCTAGTTCCGTGATTCTTCAAGATATAGAAAGTGAAACGGAATCATCCAAGAACAACCCAACTCGTAGAAGATCGAAAAGGGTATGGAAAATTCGTGATTTTGATCCGAAGTATTACGGTGAATCTGCTATGAagaaagttaaattttttaataagacAATATCTTCTGTTGTTGAACATGAACCGGTTAGTTCGGTTTCTGATACAACAACCGAAGAAGATGTTGCATTTTGTCTTATGCAATTGTCGAGAGACAACTGGAATAGGCAAAATGAACAATATGAAGAGCcagaagaagacgaagaagaagaaatagatgattatgaagatgaagacgaggaagctgaagaagaagaggaagaagaagaagaagaaatcgaaAGATCTTTAGAAGATAGCGATGAATCTCAAGAGCTAATAAAAGTTAGCAAGAATAACAATAAAGTACGTAAAGGAAGGTACAAATGTGAAACATGTAATAAAGTATTCAAATCTTATCAAGCATTGGGTGGTCATAGAGCAAGTCACAAGAAGATTAAATTGAACATAACAGTCGAAGAATCACAACCAGAATACGAAGTTGTTGAAAAGAAAATTCACGAATGTCCGGTTTGTTTTCGAGTATTTAATTCGGGTCAAGCACTTGGTGGACACAAAAGAACACATGTTATTCATGGATCAACAACAACAGTTCCAatttttagttcaaaaaaaGTTGGAAAAAGTGTTATAGATCTTAATCTTCCTGCTccaattgatgatgatgaagttagTCAAATTGAAAATTCTGCTGTTTCAGATGCAGAATTTGTCAAAACTCGTTAG 1038 0.3092 MRSHMMNLLVTKPEEDSSRTIQLSFEAESAPSSSSSEDDDDDDKGLSYGLRENPKRSIRLVDQDFSFPQVDASSVILQDIESETESSKNNPTRRRSKRVWKIRDFDPKYYGESAMKKVKFFNKTISSVVEHEPVSSVSDTTTEEDVAFCLMQLSRDNWNRQNEQYEEPEEDEEEEIDDYEDEDEEAEEEEEEEEEEIERSLEDSDESQELIKVSKNNNKVRKGRYKCETCNKVFKSYQALGGHRASHKKIKLNITVEESQPEYEVVEKKIHECPVCFRVFNSGQALGGHKRTHVIHGSTTTVPIFSSKKVGKSVIDLNLPAPIDDDEVSQIENSAVSDAEFVKTR 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00779 345 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Tsu04g00779 345 MobiDBLite consensus disorder prediction 13 32 - -
Tsu04g00779 345 ProSitePatterns Zinc finger C2H2 type domain signature. 273 293 IPR013087 -
Tsu04g00779 345 SMART c2h2final6 271 293 IPR013087 -
Tsu04g00779 345 SMART c2h2final6 225 247 IPR013087 -
Tsu04g00779 345 SUPERFAMILY beta-beta-alpha zinc fingers 224 293 IPR036236 -
Tsu04g00779 345 Pfam C2H2-type zinc finger 271 293 - -
Tsu04g00779 345 Pfam C2H2-type zinc finger 224 249 - -
Tsu04g00779 345 Gene3D Classic Zinc Finger 222 293 - -
Tsu04g00779 345 MobiDBLite consensus disorder prediction 159 215 - -
Tsu04g00779 345 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 343 IPR044303 GO:0006355
Tsu04g00779 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Tsu04g00779 345 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 343 - -
Tsu04g00779 345 MobiDBLite consensus disorder prediction 1 53 - -
Tsu04g00779 345 Coils Coil 162 210 - -
Tsu04g00779 345 MobiDBLite consensus disorder prediction 165 203 - -
Tsu04g00779 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 293 IPR013087 -
Tsu04g00779 345 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00779 Tsu-Chr4 7449740 7450777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00779 1 331 C2H2 Transcription Factor Family AT3G60580 41.983 6.21e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu04g00779 zf-C2H2_6 5.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00779 - - cam:101509915 413.69