Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00769 atgaaggcTATGCCCTTATCTTTTGAAGAATACATAGGAAAAGGGGTGTTAGATTTTGGTTCAAGTGTTGTTGTTAGTTCTTCAGATTCATTGTTCTTTCAGCAGCAAGAACAATTTTTACAAAGGTGGAGGGAAAATTGTTGCTATGCGGGCATTGAGCCCAATTCTGTTGTTGTTTTTGACCACAAAAAACCAAATCAAGAAACCACTCCTACTTCGTCATCAACACTGTCTTCCTCACACGGTAGCGCCGCCGGAGGCACCGGCGGTTCAACTGATAGCACAACCGGTGGTGCTGCCGCTGCCGCGGCAAATACTAAAAAcaatatactacaaagtgaagGAAGATGTGGAATGGAGGATTGGGAGAGTGTTTTGTCTGAATCACCAAGTCAAGATCAAGATCATTCAATATTGAAATTGATTATGGAAGATATTGAAGATGCTTCTATGGGATTAAGTAAGCTTTTACAAGTTGGTACTAGTAATTCTCATTCTCAACAAGATGTTGAATTCAATGGTTTTAGTTTTATGGATCAACAAAGTTCTGTTCTTGATCCTGTTTCTTCAAATGTTAACAACAACAATACCAACTTCGTAACCAGTATCGATTCTTCTTCTGTTGTTGCAACTACTGCTACTACTGCTGCTGAGATTTGTTCTGATTTTCCTTTTGGTAGAGTCATgaatcaaaaccctaatttcaattcTTCACAACAAGTTTCACTTTCTCAAGGTGGTGGTTTGTTTCATCAGCAGCatcaacaacagcaacaaattCAGTCTCTTGATGAGAAGTTACCTCAATTTGTTATGAATCAAAACCAAGCACAGTTTATGCCTAACCCTAGTTTGGTTTTTCCTTTCACATACTCTCAGCTGCAAGAAAACCAAGAGATTCATCATCAGCCACCAGCTAAAAGACTCAATTGTGGTACTAATTATGAAATTCCAAAGATACCCTTTTTGGATTCTGGTCAAGAGATGTTTCTTAGGagacagcagcagcagcagcagcaacagcAACATCAGCAGCAGCTTCAACTGCTTCCGCATCATCTGCAGCAGAGGCCAATGGCACCTAAGCAGAAAATGGGGAACCCTGGAAGTGGTGGCGGCGAAGATGTGTCGACTCATCAGTTTCAGCAGGCTATAATTGATCAGCTTTTTAAAGCTGCAGAACTTATAGACGCCGGTAATCCGGAACTCGCGCACGGGATATTGGCGCGGCTCAATCACCAAATTTCTCCTATTGGGAAGCCTTTTCAAAGGGCTGCTTTCTATTTCAAGGAGGCATTATTGCAATTGCTTCAATCAAATGTCAATAATGGCAACAACAACAGTAACTTTTCACCAACCGGCCTCTTGCTCAAGATTGGTGCTTATAAATCATTCTCAGAAATCTCACCGGTTCTGCAGTTTGCTAATTTCACTTCCAACCAAGCATTGCTTGAAGCGGTAGAAGGTTACGATCGAATTCACATAATAGATTTCGATATTGGTTTTGGTGGACAATGGTCTTCTTTTATGCAAGAGTTAGCACTCAGGAATGGTGGTGCACCTGCACTTAAGATTACTGCATTTGTTTCACCCTCTCACCACGACGAAATCGAGCTTAGTTTCACTCATGAGAATCTGAAACAATATGCTGGTGAAATTAACATGTCCTTTGAGCTCGAGATTCTGACACTTGAGTCTTTGAATTCTGCTTCGTGGCCTCAGTCACTTCGTGATTGCGAAGCAGTTGTTGTTAACTTGCCAATTTGCTCATTCTCAAATTATCCTTCATACCTTCCGTTGGTGCTTCGATTTGTGAAACAGCTCATGCCGAAAATTGTGGTGACATTGGATAGGAGTTGTGACCGAACTGATGCACCATTTCCTCAGCATATGATTTTTGCACTCCAGTCTTATTCCGGTTTGCTCGAGTCACTTGATGCTGTTGGTGTTAATGTTCACCCAGATGTTCTTCAGATGATCGAGAAATACTATCTTCAACCAGCAGTTGAGAAGCTGGTTTCGGGTCGTCTACGTTCACAGGACCGAACACTTCCTTGGAAAAACCTACTCTTGTCAGCAGGGTTCTCGCCGTTGACGTTTAGTAACTTTACCGAGTCGCAAGCTGAGTGTTTGGTGCAAAGGATTCCAGGTAGGGGATTTCATGTGGAGAAGAAGCAGAATTCACTCGCTTTGTGTTGGCAAAGGAAGGATCTCATCTCGGTTTCGACTTGGAGATGCTGA 2241 0.4029 MKAMPLSFEEYIGKGVLDFGSSVVVSSSDSLFFQQQEQFLQRWRENCCYAGIEPNSVVVFDHKKPNQETTPTSSSTLSSSHGSAAGGTGGSTDSTTGGAAAAAANTKNNILQSEGRCGMEDWESVLSESPSQDQDHSILKLIMEDIEDASMGLSKLLQVGTSNSHSQQDVEFNGFSFMDQQSSVLDPVSSNVNNNNTNFVTSIDSSSVVATTATTAAEICSDFPFGRVMNQNPNFNSSQQVSLSQGGGLFHQQHQQQQQIQSLDEKLPQFVMNQNQAQFMPNPSLVFPFTYSQLQENQEIHHQPPAKRLNCGTNYEIPKIPFLDSGQEMFLRRQQQQQQQQQHQQQLQLLPHHLQQRPMAPKQKMGNPGSGGGEDVSTHQFQQAIIDQLFKAAELIDAGNPELAHGILARLNHQISPIGKPFQRAAFYFKEALLQLLQSNVNNGNNNSNFSPTGLLLKIGAYKSFSEISPVLQFANFTSNQALLEAVEGYDRIHIIDFDIGFGGQWSSFMQELALRNGGAPALKITAFVSPSHHDEIELSFTHENLKQYAGEINMSFELEILTLESLNSASWPQSLRDCEAVVVNLPICSFSNYPSYLPLVLRFVKQLMPKIVVTLDRSCDRTDAPFPQHMIFALQSYSGLLESLDAVGVNVHPDVLQMIEKYYLQPAVEKLVSGRLRSQDRTLPWKNLLLSAGFSPLTFSNFTESQAECLVQRIPGRGFHVEKKQNSLALCWQRKDLISVSTWRC 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00769 746 ProSiteProfiles GRAS family profile. 376 745 IPR005202 -
Tsu04g00769 746 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 745 IPR005202 -
Tsu04g00769 746 MobiDBLite consensus disorder prediction 357 376 - -
Tsu04g00769 746 MobiDBLite consensus disorder prediction 64 100 - -
Tsu04g00769 746 Pfam GRAS domain family 386 745 IPR005202 -
Tsu04g00769 746 PANTHER SCARECROW-LIKE PROTEIN 6 15 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00769 Tsu-Chr4 7292698 7295761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00769 361 746 GRAS Transcription Factor Family AT4G00150 56.555 7.24e-140 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu04g00769 GRAS 9.5e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00769 - - gmx:100805945 853.973