Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00728 ATGGCAGCTGAAATAAGCAGTAGTACCATGAAAGCATGGACTTACTCAGAATATGGCCATGCCGTTGATGTTCTTAAATTTGATCCAAACGTGGCCTTACCTGATGTGAAAGATGATCAAGTTCTCATCAAAGTAGCTGCTGCTTCCCTTAATCCCATTGATTATAAAAGAATGGCAGGCGGCTTCAAAGCCACTGACTCCCCTTTACCAACTGCTCCAGGGTATGATGTAGCTGGAGTTGTGGTTAAGGTAGGGAGTGAAGTGAAGAAATTTAAGGTTGGGGATGAAGTTTATGGTGATATCAATGTGAAAGCTTTGGAACTTCCAAAGGTGTTTGGTTCACTGGCTGAGTATACTGCTGCAGAAGAGATACTTTTGGCTCACAAGCCGAAAAATCTAAGTTTTGCCGAAGCTGCTAGTCTTCCTTTAACAATTGAGACTGCTTATGTAGGCCTTGATTTAACTGGCTTCTCTGCTGGTAAATCCATACTTGTGCTTGGTGGTGCTGGTGGAGTGGGAACCCATATCATTCAGCTTGCCAAGCATGTCTTCGGGGCTTCCAAGGTAGCAGCTACATCTAGCACCAAGAAACTAGAATTGTTGAGCAAGTTAGGAGCTGATTTACCTATTGATTACACAAAGGAGAACTTTGAAGACCTGCCTGAAAAGTTTGATGTGGTATTTGACACAATAGGCGAAACTGAAAAGGCATTCAAGGCTCTGAAAGAAGGCGGCAAAGTTGTGACAATTGTACCACCAGGATTTCCACCAGCGATATTTTTCATACTTCCTTCTAATGGTGCTATCTTAGAGAAACTAAATCCTTACTTGGAGAGTGGAAAGGTGAAGCCAGTGCTTGACCCCAAAAGCCCATTTCCATTTTCTCAATCTGTTGAAGCATTTTCCTATCTGGAAACTGGTAGAGTTACTGGAAAAGTAGTTATCCATCCCATACCATGA 960 0.426 MAAEISSSTMKAWTYSEYGHAVDVLKFDPNVALPDVKDDQVLIKVAAASLNPIDYKRMAGGFKATDSPLPTAPGYDVAGVVVKVGSEVKKFKVGDEVYGDINVKALELPKVFGSLAEYTAAEEILLAHKPKNLSFAEAASLPLTIETAYVGLDLTGFSAGKSILVLGGAGGVGTHIIQLAKHVFGASKVAATSSTKKLELLSKLGADLPIDYTKENFEDLPEKFDVVFDTIGETEKAFKALKEGGKVVTIVPPGFPPAIFFILPSNGAILEKLNPYLESGKVKPVLDPKSPFPFSQSVEAFSYLETGRVTGKVVIHPIP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00728 319 CDD MDR_like_2 10 315 - -
Tsu04g00728 319 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 160 181 IPR002364 GO:0008270|GO:0016491
Tsu04g00728 319 SUPERFAMILY GroES-like 8 167 IPR011032 -
Tsu04g00728 319 SMART PKS_ER_names_mod 20 315 IPR020843 GO:0016491
Tsu04g00728 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 133 259 IPR036291 -
Tsu04g00728 319 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 4 319 IPR044626 GO:0016628
Tsu04g00728 319 Gene3D - 17 315 - -
Tsu04g00728 319 PANTHER CYTOSOLIC ALKENAL/ONE OXIDOREDUCTASE 4 319 - -
Tsu04g00728 319 Pfam Alcohol dehydrogenase GroES-like domain 39 104 IPR013154 -
Tsu04g00728 319 Gene3D - 152 266 - -
Tsu04g00728 319 Pfam Zinc-binding dehydrogenase 204 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00728 Tsu-Chr4 6858322 6861675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00728 70 256 Monolignol Biosynthesis Gene Families AT4G37980 25.229 6.98e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00728 K18980 - gmx:100817947 504.982