Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00727 AAAATGGGAGTTCACGGTCTCTGGGAACTACTTTCCCCCGTCGGTCGCCGTGTCTCCGTCGAAACCCTCGCCGGAAAAACACTCGCCATCGACGCGAGTATATGGATGGTACAGTTTATCAAAGCGATGCGTGATGAAAAAGGTGAAATGGTTCGCAACGCTCATTTGCTTGGATTCTTCCGTCGCATTTGTAAGCTTTTGTATCTAAGGACTAAGCCTGTTTTCGTTTTTGACGGTCGAACCCCTGCTTTGAAGATGCGTACTGTTATTGCTCGTCGGAGACAGCGCGAAAATGCTCAAGCTAAAGTTCGCAAAACTGCCGAGAAATTGCTTCTCAATAAcTTAAAGACAATGAGGTTAAAGGAACTTGCTGATAATATTAAGAACCAGAGACTGACTCAGAAGAGTGGCTCAAAGTCTCAGAAAACATCTAATCAGATGGACTTTGTTGGTAGTGGTTTAGGAAGAAGTCACACGAAAGAGCCAGAAGAAATGTCTGCAGCTATACGAATGGCAAAAATCTATCGCAGACGCAGACTATATGATGTTAAGGAGGACAAAAATCTATCGCAGACTATAACATCAACAAGTTGCAATCCTGAGGAGCTTGATGAAATGCTGGCAGCATCTATAGCTGCAGAGGAAAATGGAATTCGATCAAGAGAAGCAGGTGCATCTACTGTAATTGATTCTTCAGATGCAGGCGAAGAGACGATACTGCCATCAGACAATGCGGAAGTTGATTTATCTGTTTTAGCTGCTTTGCCACACTCAATGCAACTTGATATTCTTGCGCAGCTTAAAGGCAAGAAAACAGAAGGACTAAAGAAGCAAGTTGACAACCAGATAAGACATGAGGTTGGTGATTGTGGCAAGGGTAAAGGCATCATTTTCCATGAACCTGACATGGTTGGATGTAGCTCAAAATCTGACGTCAATGTGACATCAAGTAGTGACAACCAAAACAGAATCGATGAAATGTTAGCCGCATGTATTAATATGGAGGAAAATGCAAAGTTAGCAAACAATGTATCAAGTTCAAGTTCTCTTGGGGATTCCACCAATAAGGAAAAGGATGGTaactatgatgaagatgaagagatgaTACTGCCAGCTATGCACAGTGAAGTTGATCCAGCTGTTCTGGCCTCTCTGCCTCCATCAATGCAACTGGACCTCCTTGTTCAGATGAGAGAGCGATTGATGGCAGAGAACAGACAAAAGTATCAAAAAGTCAAGAAGGATCCTTCAAAGTTCTCTGAGCTACAGATACAAGCTTACCTTAAAACTGTTGCTTTCCGTCGCGAGATAAATGAAGTGCAGAAAGCTTCTGTCGGAGGAGGAGTAGGTGGTATACAGACTTCACGGATTGCATCTGAAGCCAACCGAGAGTATATATTCTCGTCATCCTTCTCCGGTGACAAACAAGAACTTACTTCCACCAGATCAGAGAGCAATGTCGAAGATACACAGCAAATAGAGCGGGGAACACATCCTTCCCAAAATTTTGTAAATAACATAGCAGCAGTAAATGTTTCTAATACTTCAGCTGGATTGGTTTGCAATGAATCAAATGAGCCTGTTGATGAAAGTATTCAGACATTTCTAGATGAGAGGGGTCGATTTCGAGTGAGTAGGTCAAGAGCTATGGGGATGCGCATGACCCGTGATATACAAAGGAATTTGGATTTAATGAAGGAGATCGAGCATGACAGAACATGCGTGAACAAGGTTGATAACATTGAAACAGTGCTGAATACTGAAAATAGTCCATTAGAATGTTCTGGGAATCAGGATAGTGGTAAAGCACAAGAGGTGAATTTTGACTCAGCTGGAGAGAATGTGcaaaatgagaaattaatgCTTGGCAAGGATACTTCTATAGAGATATCCTTTGAATATGATTGCAAGAATGAATCTGCAAGTGGTGGAGATGATATATTTGCCAGTTTAGTAGGAGGAATATCTATGGATCATTCTAATGCTGATGATACTGTGGTGGAAGTGCAACCTTCTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGAACTGTTCAGGGTGAGAATACCATTTTTCCTGGATATAATAACGTGGAATTGAAGTCTTCTGTTGCAGGTGGctatgatgatgataataataataataataatgataatgaaagtGAAGAAGATTGGGAAGAAGGGGATTGTACTGCTACTAAAAGTACCTTATTGAGTTCAGCTGAGTCGGAAAAGTTGGCATCAAAAGGACAATTAGAAGAGGAGTCTGATTTGCAGGAGGCAATTAGGAGAAGTCTTGAGAGCACACAGGATGGGAAACATAAACGCGTATCACCTTTAGACAAGCATTCAAGTGCTTATGAGAATAAGCTGGATCCTAATTTAGAACATGGCGATAGCATTGGTTTTGGCCCAAACCCAGTGGATTTAAATGATAATATGGATGGCTCCAATTTTCCTAGGGAAGGTCATACCAAACAGAATGAATTACATGAAACTGTAggaaacaaaaaggaaaatcatGTGACTAAAAATAACCCGGAAAGTTTCAATTTCCATGGAAGTCCGTCAAAGTCATTTGTGCCAATTAATTCCAATAACACAGATACATTGATTAACGAACCTAGCAAACTGGCTGGACACGATATTTCTGAAAATTCAATTTCAGCTGCAACTGTCATGGTGATGGGTGAAGTTCCTAATCCTATTGTTGCAGAGGAGTTATTGGATAATCATACTGATGGTAAAACATCTTTCGGTTATAACAATTTTTCCAAGGTTGGTGTGACtgaaggaaagaaaaataaatatattaatgaatctgaaccattgagtaATTCTACCGACAATACAAATACTGCTATTCTTTCCGTGGAGTCATCCTTGGAAGGAGCTAAAGAAAACCTTGATATGGAGCTAAAATTGCCTTCAGTTAACAGTGATGGAAATTTGTCTATGGAAAGGAGTAGTAACCCCACCCAAGACTCAATGAATGCCCCGGGAGATTTTCCTGTACAACTGGATGAGGATCGATTgaatgaagaaatgaaaattctTGATCGGGAATATATCAACTTAGAAAACGAGCAGAGGAAGTTTGAACGTAATGCAGAATCCGTTGATAGTGAATTATTCACTGAATGTCAGGAACTACTTCAAATGTTTGGCTTGCCATATATTATTGCTCCTATGGAAGCTGAGGCACAGTGTGCGTACTTGGAACTCTCAAAACTGGTTGATGGTGTTGTGACTGATGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTACAAGAATATATTTGATGACCGCAAATACGTAGAGACATACTTAATGGGGGACATTGAAAAGGAGCTTGGATTGACCAGAGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGACTATACTGAGGGTGTAAGCGGGATTGGCATTGTTAATGCTGTCGAGGTTATAAATGCATTCCCGGAGGAAGATGGCTTCCTGAAATTCCGGCAGTGGGTTGAGTCACCAGATCCCACCATCCTTGGAAGGTCGGATGCAAAAAAAGTATCTAAGAAAGGatcaaaatttgaagaaaaggAGTCTCCTGATTCCATCGACAAAGGAAAGCAAACTTTCATGCGTAAACATAGAAAAGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTTATCTCCACAAGTTGACAAGTCAACTGAGCCTTTCACATGGGCAAAGCCAGATCAGCTTGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGATGGTCTAGCCTGAAATCAGATGAAGTGCTATTACCTGTTTTAAAGGAATACAACAAACGTGAGACTCAACTGCGGTTGGAGGCATTTTACAGTTTCAGTGAAAGATTTGCAAAAATTCGTAGCAAGAGAGTCCAGAAAGCAGTAAAAGGAATAACTGGTAAGCCGCCTTCAGATTTAATAGATGATTCTGCAGAGACCATGTCCAAGGGTATGAAAAGTGGGAGAGGAAGTTCTGTTGACCCTGAGGATGACAAATTAGAGACTTCGAAGGGAACGGAGGAAAGTCCTGCAGGTAGGAAAAAATCAAAAGCTAAAGAGTCGACGAAAAGGAAAAATGACGGGGATACCGTTGCTAAGCAAcatacaaagaaaaagaaaatcaatgacGTTTCTTCTTCTGCGCCTGCTGCATCCGAGGTTGAGAATTTGCAGCCATGTATGCAAACAGAAGAAGGGCAACATGATGGTAAGGGATTGGCTCGGAATAAAAGTGGCAGAGGGCGTGGAAGAGGTAAAGGTGTAGGAGTAAAAAGAGGCAGGGAGAAGAGAACTCGTTTTCAATCATCTGAAACTGAAACATCATCTGGTAGTAGTGACATTGAGAATCACGAGACAAGTGTACAAGTTGATGTGTCAACAGCTCCAGAGGTTGTGCGAAGGTCAAAGCGATCTCGGAAACCTGTCAACTATTCTTTCGAGGACCTTGAAGTTGAAGATACAGTTGATTCATTTGATGAGAGCAATAAGACTGGCTTGCCTGGAGAGgcaataaaagaaaaaccatCTTGCATGGATGATACACATGTAGATGGTTTCAGCAGAGGGAATGAAAGTGGTATGATAGAAATTCCTCTGAAGGATAACTTGCCTACAGACTATCTGGAGCCAGAAACAGATGCCGGTGCAGCAACACCAATGACTCACCCTTCAGATGACTATCTTGAAATGGGAGGAGGATTCTGTGTAGATGACAGTGAGATGGATAACAACCATGATGCAATTGATGACATGAACACGGCTACTGCAAACTCTCCACCCTGTTCTGAATTTTTGGGTGAAACTGACCGTGATAAAAGTAGTCCTGATATATTGTTTTCTGGTGCTGAAAAGGCTACAACGGAAACATCGTATACTGTAGTCGTTGGGGGAAGAGAGAAAGATTTGCGAGAAACAGGAAGCACAAAGCAATTCAGTGGAGATTAG 5001 0.3999 KMGVHGLWELLSPVGRRVSVETLAGKTLAIDASIWMVQFIKAMRDEKGEMVRNAHLLGFFRRICKLLYLRTKPVFVFDGRTPALKMRTVIARRRQRENAQAKVRKTAEKLLLNNLKTMRLKELADNIKNQRLTQKSGSKSQKTSNQMDFVGSGLGRSHTKEPEEMSAAIRMAKIYRRRRLYDVKEDKNLSQTITSTSCNPEELDEMLAASIAAEENGIRSREAGASTVIDSSDAGEETILPSDNAEVDLSVLAALPHSMQLDILAQLKGKKTEGLKKQVDNQIRHEVGDCGKGKGIIFHEPDMVGCSSKSDVNVTSSSDNQNRIDEMLAACINMEENAKLANNVSSSSSLGDSTNKEKDGNYDEDEEMILPAMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPSKFSELQIQAYLKTVAFRREINEVQKASVGGGVGGIQTSRIASEANREYIFSSSFSGDKQELTSTRSESNVEDTQQIERGTHPSQNFVNNIAAVNVSNTSAGLVCNESNEPVDESIQTFLDERGRFRVSRSRAMGMRMTRDIQRNLDLMKEIEHDRTCVNKVDNIETVLNTENSPLECSGNQDSGKAQEVNFDSAGENVQNEKLMLGKDTSIEISFEYDCKNESASGGDDIFASLVGGISMDHSNADDTVVEVQPSGSDSDCDWEEGTVQGENTIFPGYNNVELKSSVAGGYDDDNNNNNNDNESEEDWEEGDCTATKSTLLSSAESEKLASKGQLEEESDLQEAIRRSLESTQDGKHKRVSPLDKHSSAYENKLDPNLEHGDSIGFGPNPVDLNDNMDGSNFPREGHTKQNELHETVGNKKENHVTKNNPESFNFHGSPSKSFVPINSNNTDTLINEPSKLAGHDISENSISAATVMVMGEVPNPIVAEELLDNHTDGKTSFGYNNFSKVGVTEGKKNKYINESEPLSNSTDNTNTAILSVESSLEGAKENLDMELKLPSVNSDGNLSMERSSNPTQDSMNAPGDFPVQLDEDRLNEEMKILDREYINLENEQRKFERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYLMGDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAVEVINAFPEEDGFLKFRQWVESPDPTILGRSDAKKVSKKGSKFEEKESPDSIDKGKQTFMRKHRKVSKNWHIPSSFPSETVISAYLSPQVDKSTEPFTWAKPDQLVLRKMCWEKFGWSSLKSDEVLLPVLKEYNKRETQLRLEAFYSFSERFAKIRSKRVQKAVKGITGKPPSDLIDDSAETMSKGMKSGRGSSVDPEDDKLETSKGTEESPAGRKKSKAKESTKRKNDGDTVAKQHTKKKKINDVSSSAPAASEVENLQPCMQTEEGQHDGKGLARNKSGRGRGRGKGVGVKRGREKRTRFQSSETETSSGSSDIENHETSVQVDVSTAPEVVRRSKRSRKPVNYSFEDLEVEDTVDSFDESNKTGLPGEAIKEKPSCMDDTHVDGFSRGNESGMIEIPLKDNLPTDYLEPETDAGAATPMTHPSDDYLEMGGGFCVDDSEMDNNHDAIDDMNTATANSPPCSEFLGETDRDKSSPDILFSGAEKATTETSYTVVVGGREKDLRETGSTKQFSGD 1666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00727 1666 SUPERFAMILY PIN domain-like 3 1137 IPR029060 -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 1342 1394 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 126 163 - -
Tsu04g00727 1666 PRINTS Xeroderma pigmentosum group G protein signature 3 20 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Tsu04g00727 1666 PRINTS Xeroderma pigmentosum group G protein signature 656 674 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Tsu04g00727 1666 PRINTS Xeroderma pigmentosum group G protein signature 55 78 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Tsu04g00727 1666 PRINTS Xeroderma pigmentosum group G protein signature 97 119 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Tsu04g00727 1666 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 264 1405 - -
Tsu04g00727 1666 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 2 272 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 1600 1614 - -
Tsu04g00727 1666 Pfam Ubiquitin binding region 375 402 IPR025527 -
Tsu04g00727 1666 Pfam Ubiquitin binding region 243 266 IPR025527 -
Tsu04g00727 1666 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 732 746 - -
Tsu04g00727 1666 Coils Coil 1009 1043 - -
Tsu04g00727 1666 Pfam XPG N-terminal domain 2 98 IPR006085 GO:0004518
Tsu04g00727 1666 CDD PIN_XPG_RAD2 3 93 - -
Tsu04g00727 1666 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 264 1405 - -
Tsu04g00727 1666 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1122 1305 IPR036279 -
Tsu04g00727 1666 SMART HhH_4 1124 1157 IPR008918 GO:0003677|GO:0003824
Tsu04g00727 1666 Gene3D - 1122 1178 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 977 1001 - -
Tsu04g00727 1666 Pfam XPG I-region 1056 1137 IPR006086 GO:0004518
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 978 1000 - -
Tsu04g00727 1666 Gene3D - 1005 1121 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 822 844 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 702 857 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 1395 1415 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 747 795 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 1455 1478 - -
Tsu04g00727 1666 SMART xpgn3 2 99 IPR006085 GO:0004518
Tsu04g00727 1666 CDD PIN_XPG_RAD2 1039 1123 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 129 152 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 1429 1445 - -
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 1506 1635 - -
Tsu04g00727 1666 Gene3D - 2 149 - -
Tsu04g00727 1666 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Tsu04g00727 1666 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Tsu04g00727 1666 SMART xpgineu 1053 1122 IPR006086 GO:0004518
Tsu04g00727 1666 MobiDBLite consensus disorder prediction 1310 1491 - -
Tsu04g00727 1666 CDD H3TH_XPG 1125 1242 - -
Tsu04g00727 1666 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 2 272 - -
Tsu04g00727 1666 ProSitePatterns XPG protein signature 2. 1056 1070 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00727 Tsu-Chr4 6836419 6852406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00727 1032 1154 Core DNA Replication Machinery Family AT5G26680 35.714 6.34e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00727 K10846 - gmx:100820295 1943.32