Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00725 ATGCTTTCTctccaattcaccatccatccTCTTCCTCCACCTCAATTCACCACCACCATTTCTTCCTTCTCTCCTACCTCTCTCTCCTTCTTCAATAATCACCACCTTCTTCGCTACAAtgtcaaaaccctaaaaaaccaTAGAATTTTCGCAATGTCTACTAATAACAACTCAGCATTCAAAATGAATCTCAATGAGTATCTTGTCACTCTTGAGAAACCACTTGGAATTCGATTCGCTCTTACATCCGATGGAAAAATTATTGTTCACTCACTCGCTAAAGGGGGTAATGCTGAAAAGTCTAGGATAATTATGGTAGGTGATACTTTGAAGAAAGCTGGTGATTCGTCGCGGAATAGTCTTGTTGAGATTAAAGATGTTGGAGATACACAGAAGGTGCTAAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCTGCATCTACATTTCCCATTCAACTACTGCATAATAAGATGAATGATCTTGAAATAGTGTATAATAGAGGTCGAGTTCCTGTTATCACATGGAACAAGAAATTATTAGCATCAAATTTACAACCATCTAGTGAGAGCGGTGGGAGTTCTGGATTTTCGATGTTCAACTCAAAGTTTCTTAATTCAAACGGAAGCAAGTTATTGAGCAATCAAAATCAACATGCCATCACCCATGGTGAAAGAAATTCATTTACTGAACAAACGATACAACTTGCTTGTGTTTTCTCTGAAGAAGTATGTGGAGATGGAGATTGGGCTCACGGAAGTTTTCCACTTGAAGAATATATTAAGGCTCTAGATCGTTCCAAGGATGAGATGTACTATAATCACTCTCTTGGTATGCGTTATAGTAAGATTACCGAGCAAATATATGTGGGATCTTGTATACAAACAGATGAAGATGTGGAAACCTTGTCAAAAGTTGAGGGAGTTACTGCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAAtgtaaaatcaatcaatgaagCTTGTCAAAAGAATAATATTCTCATCATCAACTACCCTATACGGGACGGGGATTCTTATGACATGAGAAAAAAACTCCCATTTTGTGTTGGGCTTTTATTACGGTTGCTAAGAAAGAATCTCCGTGTTTTTGTTACATGCACTTCTGGATTTGATCGGTCTCCTGCTTGTGTGATTGCATATCTACATTGGATGACAGACGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACGTGCAGGCCTGACAGGCCGGCAATTGCATGGGCGACATGGGATCTTATAGCTATGGTTGAAAGGGGTGAACATGATGGTCCTCCCACACATGCTGTAACATTTGTATGGAATGGTCATGAGGGAGAGGATGTAAATTTGGTTGGAGACTTTACTGGAAATTGGAAAGAACCAGTTAAGGCAAAGCATCGGGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCAACATCTTCACCAGCTGAAAGGGATGATAGCGGAAATGTTAACAATATAATCATGATCGGTGAAACTGCCAGCGTTCGGCCTTCTGTTCAGCACCAGCAAAAAGATGCCAACGTTGTAAAGGTGATCGAAAGACCTTTGAATGAAAAAGAGCGGTTTATGTTGGCGAAAGCTGCACGTTGTATTGCTTTCTCCATCTGTCCTGTCAGATTAGCTCCCAAATAG 1749 0.3899 MLSLQFTIHPLPPPQFTTTISSFSPTSLSFFNNHHLLRYNVKTLKNHRIFAMSTNNNSAFKMNLNEYLVTLEKPLGIRFALTSDGKIIVHSLAKGGNAEKSRIIMVGDTLKKAGDSSRNSLVEIKDVGDTQKVLKEQTSSFSLVLERPASTFPIQLLHNKMNDLEIVYNRGRVPVITWNKKLLASNLQPSSESGGSSGFSMFNSKFLNSNGSKLLSNQNQHAITHGERNSFTEQTIQLACVFSEEVCGDGDWAHGSFPLEEYIKALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTDEDVETLSKVEGVTAVLNFQSGTEAENWGINVKSINEACQKNNILIINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGEHDGPPTHAVTFVWNGHEGEDVNLVGDFTGNWKEPVKAKHRGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTSSPAERDDSGNVNNIIMIGETASVRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSICPVRLAPK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00725 582 SUPERFAMILY PDZ domain-like 70 156 IPR036034 GO:0005515
Tsu04g00725 582 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 23 582 IPR030066 GO:0005983
Tsu04g00725 582 Gene3D Protein tyrosine phosphatase superfamily 275 541 IPR029021 -
Tsu04g00725 582 Pfam Glycogen recognition site of AMP-activated protein kinase 449 530 IPR032640 -
Tsu04g00725 582 SUPERFAMILY E set domains 446 529 IPR014756 -
Tsu04g00725 582 ProSiteProfiles Dual specificity protein phosphatase domain profile. 282 441 IPR020422 GO:0006470|GO:0008138
Tsu04g00725 582 Pfam Dual specificity phosphatase, catalytic domain 303 412 IPR000340 GO:0008138|GO:0016311
Tsu04g00725 582 ProSiteProfiles PDZ domain profile. 68 149 IPR001478 GO:0005515
Tsu04g00725 582 Gene3D Immunoglobulins 436 532 IPR013783 -
Tsu04g00725 582 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 23 582 - -
Tsu04g00725 582 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 272 415 IPR029021 -
Tsu04g00725 582 CDD E_set_AMPKbeta_like_N 449 528 - -
Tsu04g00725 582 CDD DSP_laforin-like 281 427 IPR045204 GO:0019203|GO:0046838
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00725 133 582 Protein tyrosine phosphatase (PTP) family AT3G01510 68.222 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00725 - - gmx:100814503 993.416