Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00721 ATGCCTCCAAAGAAGAAACTTAAcacttcttcatcatcttccaaAAAACCCAATCCACAACCTTCAAAATACGGTATTCAACACTTCTTCGATCGTCACGCAACTCAACAACAATCTCAGAAACTTCAATCTAACACTTCAACCTCTCAAGTTGTTGCTTCCGATTCTCTCCCACCGCCGGCAAAACCTAAAGAAGCCGATGCTCCGTCGTCGGGTTCATCTTTGCAGGGCAGTACACCTAATGATTCAGTGTTACCGGCGGTCACTGATGGTACAGATAACCTCTCTGAGGTGTCTCCGGAGATTTCCAAGTCTATGTCACGCAAACGATTTAAATTCTCACCTGGAATgTTTATCAAGCAAAGTCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCGGTGAATGAAAGGCTTCAAGCAGTTTCAAAACACATGCCTAAGATAATTCAAGCATTGGCTGATTCTTCGAGGGCCAGCATGTTGGAAATTCACCGCTGCTCAGAAGATAAGACTTCTCTGGACAAAGGTGCCAAGGTTGAAGAGTTGCGTATTACACCAACTCCCAGTGCATCTGCAAAAGCTCCGTTATCATTGAGTAAATTGGGCTTGAAAAAATTAAACCCTGACCGAGATGCGGATTTTAATAGCAATCCAACTACTTTGAGCAACTCTTTAGTGTCTGGTGGAAAAAATCCCTTCAGAACTCCACCATCTTTGTCTTGTCGCGTAGATAAGCTTGCCAAGGATGCTGAACAGAATGGACCATCTGACCAACCTTTTTTGAGGCAGCACAAAAAGGCGTTGCTTGAACTTTTAGATCAAGTTGAAGATGCAATTGGTGTTGATAATGATACAGTTTGTGATAAAACCACCCATTCCTTTAAATCACAAGATGACATTGCTAACGAGCTCCCTGTCAAAGTTAACCATCtggctgaaaggacaaaatcacATATACCTAAAGATGTTGTTGGTGTTTTCGCTGATTCTAGTTACTTGGTTTTGGAGGTATCTGAAAAATTGCAACCTTCTGCTGAAGGCCCATACAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGAGCTGTAAATTTGTGGGATGAATGGTCTTACAGTGTAATTGCCCCAGGAGATACTGTGAATGTAATTGGTCAATTTGATGAAGGGGGAAATTGTGATATTAATCATGATAACAATTTTTTGATTGTACACCCAGATATTCTTGTGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGATGAGAGACTAAAGTCCAATGAGCACTCAACTGTAGCTTTATGTGGAACCTTGCTTCATCAAATTTTTCAGGCTGGGCTTACAAATGACAATCCTACAATAGACTTCTTAGAATGTTACACAGAAGTGGTTTTACAGAGAAATGTTGAAAGTTTATTTGCATGTGGAGTAAATGAAAAGGATGTTCGCAAAACCATGATTGATGCTATCCCTAGAATATACAGTTGGATTATGCTGTTCAGAAATATGGAGGAAAGAGAAGACCCTAACGTTAATTTTGGATCTGTTAATGGAATGAAGAACGTTGGAATATCTGAGGTAATTGATATTGAAGAAATGGCATGGGCACCAAAATATGGTTTGAAAGGGATGATTGATGCTTCGGTTAGAGTGAAGGTTCAATCTAGAAAAGATAAAGCAGAGGAGAAGATCATGCCACTAGAGTTTAAAACTGGAAAATCACCTAGTAGCCAGACATCAGTAGAACATAATGCCCAAGTAATTTTGTACACTCTCTTGATGTCTGAAAGGTACCAGAAGACCATTGATTCTGGTCTTTTGTATTATCTCCAAACAGATCAGACACAGgGCATTACGGTTCAAAGATCTGACACAGTTGGGTTGATAATACGTCGTAATGAGCTAGCAAGTGATATTTTGAAGGCATTAGTATTGCAACAACTTCCACCAGTGTTACAGAGTCCTAGCATGTGCAGAGGCTGTCGCCATCTTAATGTCTGTAGCATTTATAATAAGGCACATGGTGGAACCATCGAGAGCAAGGAATTGGGAGATGTTTTCAGTTCCAATACTAATCACTTGACATCATCTCATTCTAAGTTCCTCTGCCATTGGGATCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTCGTAAAGAAAGACGTGTGGCGATCATATAATTTGGGGACTCGCAGTGCTGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATACCATATTCAAAATCTCATGAAAATAATAGTTTCGTTTATCGTTTTGTACCACACGATACTTCTTGCACCCCTATAGTTTCTGATGATGATCCTTCTAGTGCCTCTTTGAAAAATGATTTAGGTCTCACACTGAGAAGTGGTGACTATGTGatattgAGTAATGAATCAAGCCATCAAACTATTGCAAAAGGGGTGATTTCAGATATTAGTCAGAATCATATATCTGTTACCTTTTCCAAGCTCTTGAGAATTCCTGGGAGGACTTCCACGGAACATGATCTCCTTCAGCAGGTTTGGAGAATCGACAAGGATGAAGCTGTGACTTCGTTTGCAATTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCAAAGTACTCATCTCCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGTTCTATACTTAGCCAGGATCCAGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAGAGCGATTCTCAAGATACTTGTAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCCTTGTTGATTAGAGGCACATCCATTTTACTAACAGCATATACAAATTCTGCTGTTGATAATTTACTAATCAAATTAAAAGCACAGGGCATTGATTTTGTACGTGTTGGAAGACATGGAGTAGTGAATGAAGAGGTCAGAGGGTACTGCCTTTCTGAAACAACCGTACAGACTGTTGAAGATATCAAAATAAGGTTAGAACAAGTCAAAGTTGTTGCAGTTACTTGTTTGGGCATTTCCAGTCCCCTGCTTGCTGGCAAGAGATTTGATGTATGCATTATGGATGAAGCCGGACAGACTACTCTGCCGGTGTCGTTGGGCCCTCTAAGATTTGCTTCGACGTTTGTTCTTGTGGGGGATCATTATCAACTGCCGCCACTTGTCCATAGTACAGAGGCCCGAGAAAATGGCATGGGGATGAGTTTGTTTTGTAGGCTTTCAGAAGCCCATCCACAGGCGATTTCAGCTTTACAGAGTCAGTACCGTATGTGTCAGGGTATTATGGACTTGTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATCTGAGATAGCTAATGCCAAACTTGAGTTTTCTGGCTTAAACTGCAGTTTGCCTTGGCTAGAAGATGTTTTGAATCCTGGAAGACCAGTGATATTTATTGATACTGATATGTTGCCTGCCTTGGAGGAAAGAGATCAGAAAATTGTAAATAACCCTATCGAAGCTCACATAATTGCCGAGATTGCAAAGGAATTGGTAAAAAATGGAATTGATGGAGAGCACATCGGCATTATTACTCCCTATAATTCGCAAGCAAACCTAATCCGCCAAGCTGCTAGCATAACGTCCTTGGAGATACATACCATTGATAAATACCAGGGTAGAGATAAAGACTGTATATTATTATCTTTTGTACGGTCTTGTGAGAACCCAACAAGCTGTGTGGCTTCTCTACTCGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAGAAAGTTGATCATGGTAGGGTCTTGTAAAACTCTATTGAAGGTTCCACTACTGAAGCTTCTCATTAAGAAAGTTGAAGAGCAATCTGGAATTTTAAGTGTGTCTAAGAAGGATATCTATAGAAATGGTGAGCTCATTAGATGTTCTCAAATTgcttcttcaaaacaaaaattagatgTTCCCAAATGA 4056 0.3984 MPPKKKLNTSSSSSKKPNPQPSKYGIQHFFDRHATQQQSQKLQSNTSTSQVVASDSLPPPAKPKEADAPSSGSSLQGSTPNDSVLPAVTDGTDNLSEVSPEISKSMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAVSKHMPKIIQALADSSRASMLEIHRCSEDKTSLDKGAKVEELRITPTPSASAKAPLSLSKLGLKKLNPDRDADFNSNPTTLSNSLVSGGKNPFRTPPSLSCRVDKLAKDAEQNGPSDQPFLRQHKKALLELLDQVEDAIGVDNDTVCDKTTHSFKSQDDIANELPVKVNHLAERTKSHIPKDVVGVFADSSYLVLEVSEKLQPSAEGPYKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNVIGQFDEGGNCDINHDNNFLIVHPDILVSGTRVAASFSCPRRTVLDERLKSNEHSTVALCGTLLHQIFQAGLTNDNPTIDFLECYTEVVLQRNVESLFACGVNEKDVRKTMIDAIPRIYSWIMLFRNMEEREDPNVNFGSVNGMKNVGISEVIDIEEMAWAPKYGLKGMIDASVRVKVQSRKDKAEEKIMPLEFKTGKSPSSQTSVEHNAQVILYTLLMSERYQKTIDSGLLYYLQTDQTQGITVQRSDTVGLIIRRNELASDILKALVLQQLPPVLQSPSMCRGCRHLNVCSIYNKAHGGTIESKELGDVFSSNTNHLTSSHSKFLCHWDHLIDLEAKGTEFVKKDVWRSYNLGTRSAGGVSSIVIDASQGIPYSKSHENNSFVYRFVPHDTSCTPIVSDDDPSSASLKNDLGLTLRSGDYVILSNESSHQTIAKGVISDISQNHISVTFSKLLRIPGRTSTEHDLLQQVWRIDKDEAVTSFAIMRFNLVQLFLQNDQSTHLRRMIVDLEAPRFDSGSILSQDPAISYVWSEQSLNDDQRRAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRVGRHGVVNEEVRGYCLSETTVQTVEDIKIRLEQVKVVAVTCLGISSPLLAGKRFDVCIMDEAGQTTLPVSLGPLRFASTFVLVGDHYQLPPLVHSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIANAKLEFSGLNCSLPWLEDVLNPGRPVIFIDTDMLPALEERDQKIVNNPIEAHIIAEIAKELVKNGIDGEHIGIITPYNSQANLIRQAASITSLEIHTIDKYQGRDKDCILLSFVRSCENPTSCVASLLGDWHRINVALTRAKRKLIMVGSCKTLLKVPLLKLLIKKVEEQSGILSVSKKDIYRNGELIRCSQIASSKQKLDVPK 1351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00721 1351 Gene3D - 1021 1119 IPR027417 -
Tsu04g00721 1351 Gene3D - 847 1020 IPR027417 -
Tsu04g00721 1351 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2-LIKE 71 1333 - -
Tsu04g00721 1351 MobiDBLite consensus disorder prediction 215 237 - -
Tsu04g00721 1351 Gene3D - 415 679 IPR011604 -
Tsu04g00721 1351 Pfam AAA domain 1098 1298 IPR041679 -
Tsu04g00721 1351 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 1307 IPR027417 -
Tsu04g00721 1351 MobiDBLite consensus disorder prediction 1 107 - -
Tsu04g00721 1351 Pfam AAA domain 922 1014 IPR041677 GO:0004386
Tsu04g00721 1351 Pfam AAA domain 1023 1089 IPR041677 GO:0004386
Tsu04g00721 1351 MobiDBLite consensus disorder prediction 212 239 - -
Tsu04g00721 1351 CDD DEXXQc_DNA2 921 1121 - -
Tsu04g00721 1351 MobiDBLite consensus disorder prediction 31 55 - -
Tsu04g00721 1351 Gene3D - 1120 1332 IPR027417 -
Tsu04g00721 1351 CDD SF1_C_Upf1 1122 1297 IPR041679 -
Tsu04g00721 1351 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g00721 1351 Pfam DNA replication factor Dna2 360 562 IPR014808 -
Tsu04g00721 1351 Pfam Domain of unknown function DUF83 566 679 IPR022765 -
Tsu04g00721 1351 PANTHER DNA2/NAM7 HELICASE FAMILY 71 1333 IPR045055 -
Tsu04g00721 1351 MobiDBLite consensus disorder prediction 69 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00721 Tsu-Chr4 6738306 6755566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00721 1 1063 Core DNA Replication Machinery Family AT1G08840 54.251 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00721 K10742 - gmx:100799415 1785.77