Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00718 ATGGTTCCTTCCTCCATCAACTCATTCTCTATGATCCCAACTCCGTCATTCAATGCTATTGATGACAATGGATCCCAAAGAGAAATTTTCAATGGTCAAAATCCAATGACCTTTGCACCAAACAATGACAAAATGGAAGTCATGCATGGTCGCCTTAACACTAGCAAAGGAATTTGGGGTTTGTTAAACAACAATCTCTTTCAGTACGGTGAAACTTCACAATCTTGGGCGAGTTCGTCTCTATCAGTTAAATCTGAGCTTCAAGGCGATCTCTCTGGCATTGGAAACAACTCCCGAGATAGTGATCAGGAATTTGCTCTTAGTGAGCAGAAACGACAAAAGAGGATTCATAATAATAGTGAAGTTCAACTCAGAGATCCCAATATAATCAAAGGCCAATGGACTGCGAACGAGGATAGgatTCTTGTCCAATTGGTGAATGAGTTTGGTCTTAAAAGATGGTCCAAAATTGCTAACCATCTGGAAGGCAGGATTGGAAAACAGTGCAGGGAGAGATGGAATAACCATCTTCGACCGGACATTAAGAAAGATTCATGGAGCGAAGAGGAGGACAGAGTACTGATTGAAGTTCACAAGATATTCGGGAACAAATGGGCTGAAATTGCAAAGAGTTTGCCTGGGCGCACCGAGAACTCTATCAAGAACCACTGGAACGCCACCAAGCGCAGCCTGAACACCAAGAAGAGGCCGAATAGGCGGAATAGTTTGAAGGGAACACTACTTCAGAAATACATCAGTGAAGTCACTGCCGCCGAGGAAGCTGAAAAGGAGCTGATTACAAGTTCGGAGAGTGATTACAATTCTGAAGGTTTGGCTACTCCAGAGGATGAAATTCAAAGCTATGCTCCGATGGTGTTCAATGGTACTAGTACTGATGATGGAATAGCAAGTGGTTCTGGCACTGCAATGAATTATGGGCTTGGATCATATGGAATGGCAAGTGGTTCTGGCACAACAATGAATTATGAGTTTTATCCTGAGGTTCCCATGAAGCAGGAGCTTGATCTCATGGAGATGATCTATAGAAACAACCCTTAA 1059 0.4287 MVPSSINSFSMIPTPSFNAIDDNGSQREIFNGQNPMTFAPNNDKMEVMHGRLNTSKGIWGLLNNNLFQYGETSQSWASSSLSVKSELQGDLSGIGNNSRDSDQEFALSEQKRQKRIHNNSEVQLRDPNIIKGQWTANEDRILVQLVNEFGLKRWSKIANHLEGRIGKQCRERWNNHLRPDIKKDSWSEEEDRVLIEVHKIFGNKWAEIAKSLPGRTENSIKNHWNATKRSLNTKKRPNRRNSLKGTLLQKYISEVTAAEEAEKELITSSESDYNSEGLATPEDEIQSYAPMVFNGTSTDDGIASGSGTAMNYGLGSYGMASGSGTTMNYEFYPEVPMKQELDLMEMIYRNNP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00718 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 181 IPR017930 -
Tsu04g00718 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 232 IPR017930 -
Tsu04g00718 352 ProSiteProfiles Myb-like domain profile. 126 177 IPR001005 -
Tsu04g00718 352 MobiDBLite consensus disorder prediction 104 120 - -
Tsu04g00718 352 CDD SANT 134 177 IPR001005 -
Tsu04g00718 352 PANTHER MYB PROTEIN-RELATED 37 266 - -
Tsu04g00718 352 PANTHER MYB DOMAIN PROTEIN 100-RELATED 37 266 - -
Tsu04g00718 352 SUPERFAMILY Homeodomain-like 128 224 IPR009057 -
Tsu04g00718 352 ProSiteProfiles Myb-like domain profile. 178 228 IPR001005 -
Tsu04g00718 352 SMART sant 130 179 IPR001005 -
Tsu04g00718 352 SMART sant 182 230 IPR001005 -
Tsu04g00718 352 Gene3D - 184 250 - -
Tsu04g00718 352 MobiDBLite consensus disorder prediction 88 120 - -
Tsu04g00718 352 MobiDBLite consensus disorder prediction 88 103 - -
Tsu04g00718 352 Pfam Myb-like DNA-binding domain 134 191 - -
Tsu04g00718 352 Gene3D - 130 182 - -
Tsu04g00718 352 CDD SANT 185 228 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00718 Tsu-Chr4 6716302 6719019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00718 129 255 MYB Transcription Factor Family AT4G18770 69.291 3.84e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g00718 Myb_DNA-bind_6 9.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00718 K09422 - mtr:MTR_4g088015 446.817