Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00716 ATGTATAGATTAATATCCACGCCGGCATCAACATTCCGCCAATTCCGGCGACTCCGCTCTAGACCTAAAATCACCGCCGCAAGTGTTGAAGAAAAATACGCTTCACGTATCTTACTATGGCGGTACCAGATCCTAGATCCAGACAGCGATTTCGTTGCGTATTGGAACAAAGTCTTTCTTGTCACAAGTCTTCTCGCATTGTTCATAGATCCTCTTTACTTCTTCCTTCCAACAGTTGGCGGACCCGCTTGTTTAACGGCGGATCCGAAAATCAGTATCTTATTAACCGTTCTTCGATCGTTTGCGGATCTTTTTTATCTTCTTCATATGGTTATGAAGTTTCGTACTGCATATGTTGCTCCTAATTCGAGAATTGTCGGTCGCGGTGAGCTTGTTATGGATTCTTGGGAAATTGCTATGCGGTATTTGAAAagtgattttgttgttgatctTGCTGCTACCATTCCATTGCCTCAGGCATGTTCCCTTAtcgttgtttggttagtgattCCAGCGAGTAGAGGCACAAAAACTGAACATGGCGGCACAAAAAGTGATCATGCCAACAACACTCTTGCACTTCTTGTTCTTATTCAGTATGTTCCTAGGCTCTTTCTCATCTTTCCTTTGAACCAGCGTATTCAAAAAACAACCGGTGTTATAGCCAAGACTCCATGGATTGGTGCTGCATATAATCTTGTTCTCTACATGCTAGCTAGCCATGTTACAGGAGCAACTTGGTATCTATCATCAATAGGAAGACAATACAATTGCTGGAAAACACAATGCGATAATGAAAATCGATCGCATACCCTTTCTTGCTTGCCAAGTTTTCTTGATTGTAATAGTTTGGAACTCCCTGAGAGACAATACTGGCTAAATATCACACGTACTGTTACCAAGTGTGATGCAAAGAGTAAGATCAACATCAAATACAAGTTTGGGATGTTTGCAGATGCTTTCCTCAATGATGTTGTCACTACTAGTTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGgtttaagaaatttaagTTCTTATGGGCAAAATTTGGACACCACCACATACCTTTTAGAGACACTTTTCTGCATCGTCTTATGCATTGCTGGATTAGTTCTCTTTTCACTTTTGATTGGAAACATGCAGACATACTTGCAATCGATGACAGTTAGACTAGACGAATGGAGGATTCGGAAAAGAGATACAGAGGAGTGGATGAGGCATCGACAGTTACCTCCAGAATTGCAGGAGCGTATCCGTCGCTTCGTTCAATATAAATGGCTAGCTACTAGAGGAGTAGATGAAGAGTCCATACTGCTTTCCTTACCTTTGGATCTACGCCGCGAAATTCAACATCACTTGTGTCTCTCTCTAGTGCGACGTGTGCCATTTTTCTCACAAATGGATGATCAACTACTTGATGCAATATGCGAACGCCTTGTATCATCATTAAGTACAGAAGGCACATATATATTTCAAGAAGATGATCCAGTAGATGAAATGTTGTTTATCATTAGAGGTACATTAGAGAGTTCTACAACTAATGGAGGAAGGTATGGATTCTACAATTCAATCACACTAAGGCCAGGAGACTTTTGTGGAGAAGAATTGTTAACATGGGCTTTATTACCAAACTCAACCCTCAATTTACCTTCCTCTACTCGTACCGTAAAAGCTCTTTCCGAAGTAGAAGCGTTTGCGCTACAAGCAGAGGATCTAAAATTTGTGGCGAGTCAGTTCAAGCGGCTTCATAGCAAGAAACTTCAGCATGCTTTTAGGTATTATTCACAGCAATGGAGAACATGGAGTTCTTGTTTCATACAAGCAGCATGGAGAAAGCATCAGAAAAGGAAGGCGGCAAGGGAGTTGGCAATTAAAGAGGGAATTTACTACATGGAGGATCCTGAGATCGAGGAATCATCAGAGAATGATAAAAATGTTAATAATCTTGGTGCTACTGTTTTGGCTTCAAGATTTGCTGCAAATACAAAGAAAGGGAATAAGATTCAAGATAGTGATCCAGTGCCGCAGTTGTTTAAACCTGATGAACCTGATTTCTCTCATGGCGGTGTTTAG 2079 0.4007 MYRLISTPASTFRQFRRLRSRPKITAASVEEKYASRILLWRYQILDPDSDFVAYWNKVFLVTSLLALFIDPLYFFLPTVGGPACLTADPKISILLTVLRSFADLFYLLHMVMKFRTAYVAPNSRIVGRGELVMDSWEIAMRYLKSDFVVDLAATIPLPQACSLIVVWLVIPASRGTKTEHGGTKSDHANNTLALLVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQYNCWKTQCDNENRSHTLSCLPSFLDCNSLELPERQYWLNITRTVTKCDAKSKINIKYKFGMFADAFLNDVVTTSFKERYFYCLWWGLRNLSSYGQNLDTTTYLLETLFCIVLCIAGLVLFSLLIGNMQTYLQSMTVRLDEWRIRKRDTEEWMRHRQLPPELQERIRRFVQYKWLATRGVDEESILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTEGTYIFQEDDPVDEMLFIIRGTLESSTTNGGRYGFYNSITLRPGDFCGEELLTWALLPNSTLNLPSSTRTVKALSEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWSSCFIQAAWRKHQKRKAARELAIKEGIYYMEDPEIEESSENDKNVNNLGATVLASRFAANTKKGNKIQDSDPVPQLFKPDEPDFSHGGV 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00716 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 33 689 - -
Tsu04g00716 692 SMART cnmp_10 465 596 IPR000595 -
Tsu04g00716 692 Gene3D Helix hairpin bin 393 456 - -
Tsu04g00716 692 Pfam Ion transport protein 54 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu04g00716 692 Gene3D Jelly Rolls 463 583 IPR014710 -
Tsu04g00716 692 ProSiteProfiles cAMP/cGMP binding motif profile. 465 595 IPR000595 -
Tsu04g00716 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 33 689 - -
Tsu04g00716 692 SUPERFAMILY cAMP-binding domain-like 396 590 IPR018490 -
Tsu04g00716 692 Gene3D - 59 390 - -
Tsu04g00716 692 Pfam Cyclic nucleotide-binding domain 488 576 IPR000595 -
Tsu04g00716 692 SUPERFAMILY Voltage-gated potassium channels 46 387 - -
Tsu04g00716 692 MobiDBLite consensus disorder prediction 666 692 - -
Tsu04g00716 692 CDD CAP_ED 465 596 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00716 Tsu-Chr4 6699293 6703941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00716 25 688 Ion Channels AT5G14870 66.955 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00716 K05391 - gmx:100802812 1174.84