Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00714 ATGCAACTTGCGTTGAATCAAAAAATAGAATCGTTCAACCCTCGTTCAGAATTGTTCTCTCAAGCTTCGATACAATTTCGCTGCAAAGCTTCGTTTCAAAAATCTCTCAAGcttcaattcaattttgttcatccTTCAATCCAGTCTGAATCAGTGCTATTTAAGTCACTAAGGAGGCTTGAACTGATGGGAATGTCTATGAATATTCTGGAgTCAACTGCAATCGAAAAGGCTGTCAATCCTCTCCGAAAACATGGATCCAAGCAAGTCCATGATCTCACAAAGATTCTTATTGCGTATGTTTCTGTTTTTATCTGTAAATCATTGTTTACTTTATACAATCACTGTTGTTATGTTGATCCATCTGGTCTAGCATTTCTTCACAGTAAGGAAGTCAAAGTGATACATGGAGATTTCAAAACTTCTAATATTTTGATTGATTCTATTAGAGATCCACTTTTGTTCTCAGATTCAGAGGCTTAG 483 0.3437 MQLALNQKIESFNPRSELFSQASIQFRCKASFQKSLKLQFNFVHPSIQSESVLFKSLRRLELMGMSMNILESTAIEKAVNPLRKHGSKQVHDLTKILIAYVSVFICKSLFTLYNHCCYVDPSGLAFLHSKEVKVIHGDFKTSNILIDSIRDPLLFSDSEA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00714 160 Gene3D Transferase(Phosphotransferase) domain 1 121 154 - -
Tsu04g00714 160 ProSiteProfiles TFIIS N-terminal domain profile. 30 108 IPR017923 -
Tsu04g00714 160 Pfam TFIIS helical bundle-like domain 56 98 IPR017923 -
Tsu04g00714 160 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 46 98 IPR035441 -
Tsu04g00714 160 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 26 100 IPR035441 -
Tsu04g00714 160 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Tsu04g00714 160 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 48 99 IPR044805 -
Tsu04g00714 160 SUPERFAMILY Protein kinase-like (PK-like) 122 148 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00714 Tsu-Chr4 6664863 6669262 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Tsu04g00714 Med26 8.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00714 - - gmx:100799367 66.6254