Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00710 atggaCAAAAAAGAGTGCAATTCTTCTCATCAAGATCCTGATGTACGAAAAGGACCATGGACTATGGAAGAAGACATGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAACTCCTTGGCAAAATCTGCTGGTCTTAAACGTACCGGAAAAAGTTGTAGACTCCGCTGGCTAAACTATCTTCGACCTGATGTTAGACGAGGGAATATTACAACCGAGGAACAACTCTTAATCATTGAACTTCATGCAAAGTGGGGAAACAGGTGGTCTAAAATCGCGAAACATCTACCGGGACGAACCGATAATGAGATAAAGAACTATTGGAGGACTAGGATTCAGAAACATATCAAGCAAGCTGAGAATTCACAACAACAAAGTTCTTCTGATATTCAAataaatgataatgataatcaAATAGCAAGCACTAGTCAAATTTCAGCCATGCCTGAGCCAATGGATACAAATATCATCTCACCACCTTCTTACCAAGGAATTATGGAACCATTTCCAAATCAGTTTCCTACAATCTCTGATCAATCAAGTTGTTGTAACAATGACAATAACTATTGGAGCATGGAAGATCTCTTGTCATTGCAATTACTAAATGGAGATTAA 624 0.3718 MDKKECNSSHQDPDVRKGPWTMEEDMILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITTEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENSQQQSSSDIQINDNDNQIASTSQISAMPEPMDTNIISPPSYQGIMEPFPNQFPTISDQSSCCNNDNNYWSMEDLLSLQLLNGD 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00710 207 Gene3D - 17 69 - -
Tsu04g00710 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Tsu04g00710 207 CDD SANT 74 113 IPR001005 -
Tsu04g00710 207 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Tsu04g00710 207 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Tsu04g00710 207 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Tsu04g00710 207 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 204 - -
Tsu04g00710 207 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 204 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tsu04g00710 207 Gene3D - 72 144 - -
Tsu04g00710 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Tsu04g00710 207 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Tsu04g00710 207 SMART sant 69 117 IPR001005 -
Tsu04g00710 207 SMART sant 16 66 IPR001005 -
Tsu04g00710 207 CDD SANT 19 64 IPR001005 -
Tsu04g00710 207 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00710 Tsu-Chr4 6617447 6623828 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00710 11 207 MYB Transcription Factor Family AT3G01530 57.360 1.60e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g00710 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00710 K09422 - gmx:778046 323.553