Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00707 ATGGTGGAAAGTGAAGAACAAAATCGAAGTCCGGTGATCCGAAAGAAAACGTCGACGATGGGATCGAATAGCCAAAATGTAATATCACTTATAAGTCCAAGATTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAAGCACTTTTACTTGCATCTCTCATTGTTGAAGATACACCTGATAGAAATTCAAAACAGAAGAGGCGTTTTGTTTTGAATTCTAAATCTCCACTCTCTAATTCGTCAAGGAAACGTAGAGCTCAGAGGAATCCTCCACAACCAATTGTTCTTGATCTAGACGATGAAGAATCTCCGAAAAAGGATAatggtaaaaagaaaaaagaaaagaaaatttgtgTTACTGAAGAAAGTAAAGCTAAAGAAAAGGAATTGACTCAAAAGGGTATTGATGTCAATTCAACTAGTTCTTCTGCTCTTCCTTGTATGGATAAGCTGAGAGAAGAGCTTTCATGTGCTATTTGTTTAGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAGAAAATGTCTGAGATCTGCTGCAGATAAGTGTGGCAAAAAGTGTCCTAAGTGTAGGCAATTGATAAGCAATGGACGATCGTGCACTGTGAACACGGTTCTCTGGAACACAATTCAACTCCTATTTCCTCAAGAAATTGAAGCAAGGAAAGCAGCTGCTGTCACCGCGAATACTAGACAAGCACCAGCTCAGAATCCAATTCCAGAAACAACATTTTACAATAACCAAAGGAATAGAAGTATACAACCATATCCATCGAGTAGGGCTATGAGTTCGAGGAGATATGAAACAACGACAGAGAATGATGAGGATGCTGCATTGGCTAGATTGTTGCAAAGAGAAATTAATGGACTAAGCAATCAAAGGGCAACGGCAACAACAAGGGTTTCAAGTGTAAGAGGAAGGACAAGAAGAGGGGTTTCGGCACAAGATGTAGATGCTGCTTTTGCTCTAAGGTTGCAAAGAGAGGAGTTTATGCATGCTTTTAGGGGAAGTAGCAACAACCAGGAGCAATCATCTTCTTCGTCGTCATCATTAGCTAGGTCAAATTTGAGGGCAATGGCAACTAGAGCGATGAATATTCGTATTAGAGATCAAAGGATGTAA 1140 0.3947 MVESEEQNRSPVIRKKTSTMGSNSQNVISLISPRFKSAAAMAGWDEEALLLASLIVEDTPDRNSKQKRRFVLNSKSPLSNSSRKRRAQRNPPQPIVLDLDDEESPKKDNGKKKKEKKICVTEESKAKEKELTQKGIDVNSTSSSALPCMDKLREELSCAICLEICFEPSTTPCGHSFCRKCLRSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKAAAVTANTRQAPAQNPIPETTFYNNQRNRSIQPYPSSRAMSSRRYETTTENDEDAALARLLQREINGLSNQRATATTRVSSVRGRTRRGVSAQDVDAAFALRLQREEFMHAFRGSSNNQEQSSSSSSSLARSNLRAMATRAMNIRIRDQRM 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00707 379 SUPERFAMILY RING/U-box 150 221 - -
Tsu04g00707 379 MobiDBLite consensus disorder prediction 99 117 - -
Tsu04g00707 379 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Tsu04g00707 379 ProSiteProfiles Zinc finger RING-type profile. 158 197 IPR001841 -
Tsu04g00707 379 MobiDBLite consensus disorder prediction 70 88 - -
Tsu04g00707 379 MobiDBLite consensus disorder prediction 62 117 - -
Tsu04g00707 379 PANTHER - 20 245 - -
Tsu04g00707 379 PANTHER UNCHARACTERIZED 20 245 - -
Tsu04g00707 379 MobiDBLite consensus disorder prediction 340 362 - -
Tsu04g00707 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 227 IPR013083 -
Tsu04g00707 379 Coils Coil 286 306 - -
Tsu04g00707 379 SMART ring_2 158 196 IPR001841 -
Tsu04g00707 379 MobiDBLite consensus disorder prediction 340 379 - -
Tsu04g00707 379 MobiDBLite consensus disorder prediction 1 26 - -
Tsu04g00707 379 PANTHER - 304 376 - -
Tsu04g00707 379 PANTHER UNCHARACTERIZED 304 376 - -
Tsu04g00707 379 Pfam Zinc finger, C3HC4 type (RING finger) 158 196 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00707 Tsu-Chr4 6555961 6558878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00707 120 200 C2H2 Transcription Factor Family AT5G39550 35.366 1.54e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00707 - - gmx:102666585 407.527