Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00693 ATGGGAAGACAACCATGTTGTGATAAGGTTGGTTTAAAGAGAGGTCCATGGACTATTGAAGAAGATCATAAGCTTATGAGTTTTATACTTAATAATGGTATTCATTGTTGGAGAATGGTTCCTAAACTTGcagGTCTTCTAAGATGTGGAAAAAGTTGTAGATTGAGATGGATTAATTATTTGAGGCCAGACCTTAAGAGAGGTGATTTTACTGAAATGGAAGAGGATCAAATTATTCAGCTACATGCACGGCTTGGTAACAGGTGGTCAAAGATTGCTTCGCATTTTCCAGGAAGAACGGACAATGAAATTAAGAATCATTGGAACACAAGAATCAAGAAGAAGCTAAAGTTCCTTGGTCTAGATCCTGTGAACCACAAGCCAATTGAGCAAAAGCAAcaaagtgatgatgatgaaaaagaCAAAACTAACCAACAACTAAATATTTCACAAGGGGTTGAAGAAAATGTGGAAAATATTAAATCTTTGGACAATGATGTCAcaaaagaaatgacaaaaacagaatggaaaaaagaagaaaacaaagtgACTTGGGATGATAGTGATGAACTTTTaaacaattttgaaattctATGTTCAAATTTGGATTTAGGAACATGGATGAACCAAGGCACTAACACTAGTACAAATTCTGTTTCTAGTTCCTCTGTCTCTTTTGATGATGCTAGCCACATTTCTATTGATGAGTCCTCTTACCTTCAACAAAATTCCTTACAACATTGGGTTGATAGTATGGATTCCATTCTCTCATGGGATGGCTTCAATCCTCTTGATCAagatatttcattttttggaAAATAG 822 0.3151 MGRQPCCDKVGLKRGPWTIEEDHKLMSFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGDFTEMEEDQIIQLHARLGNRWSKIASHFPGRTDNEIKNHWNTRIKKKLKFLGLDPVNHKPIEQKQQSDDDEKDKTNQQLNISQGVEENVENIKSLDNDVTKEMTKTEWKKEENKVTWDDSDELLNNFEILCSNLDLGTWMNQGTNTSTNSVSSSSVSFDDASHISIDESSYLQQNSLQHWVDSMDSILSWDGFNPLDQDISFFGK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00693 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu04g00693 273 CDD SANT 16 61 IPR001005 -
Tsu04g00693 273 Gene3D - 68 149 - -
Tsu04g00693 273 SMART sant 66 114 IPR001005 -
Tsu04g00693 273 SMART sant 13 63 IPR001005 -
Tsu04g00693 273 CDD SANT 70 110 IPR001005 -
Tsu04g00693 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu04g00693 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu04g00693 273 PANTHER MYB DOMAIN PROTEIN 40 2 250 - -
Tsu04g00693 273 Gene3D - 11 67 - -
Tsu04g00693 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu04g00693 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu04g00693 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu04g00693 273 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Tsu04g00693 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00693 Tsu-Chr4 6431060 6432362 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00693 1 135 MYB Transcription Factor Family AT5G16600 75.556 1.81e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g00693 Myb_DNA-binding 7.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00693 K09422 - gmx:100783231 412.535