Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00689 ATGGATCCGAAAGCATCATGGAGCGAAGAGGAGGAAAAAGTATTGATCGAAGCTCATAAGAAACTTGGAAACAAGTGGACTGAAATTGCAAGAATGTTACCTGATCGCACTGAGAACGCCGTTAAGAACCACTGGAACACCGCAATACGCAGCCATAACCGCAAGAACAGAAAGTACCGGTTTGATGAGAAAGAGGATGGTGAAGATTTGACTACTAGAGAGGATGAACAACCTAGCGGCTTTGAAAATGGAATGGAGTTTTTTGTTGAGGTTCCCATCAAGGAGGAAATGGATTTCATGGAGATGATCAATAATAAACCTTAA 324 0.4198 MDPKASWSEEEEKVLIEAHKKLGNKWTEIARMLPDRTENAVKNHWNTAIRSHNRKNRKYRFDEKEDGEDLTTREDEQPSGFENGMEFFVEVPIKEEMDFMEMINNKP 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00689 107 SUPERFAMILY Homeodomain-like 5 55 IPR009057 -
Tsu04g00689 107 PANTHER TRANSCRIPTION FACTOR MYB119-RELATED 4 62 - -
Tsu04g00689 107 Gene3D - 6 50 - -
Tsu04g00689 107 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Tsu04g00689 107 Pfam Myb-like DNA-binding domain 6 47 IPR001005 -
Tsu04g00689 107 MobiDBLite consensus disorder prediction 60 84 - -
Tsu04g00689 107 ProSiteProfiles Myb-like domain profile. 4 49 IPR001005 -
Tsu04g00689 107 SMART sant 3 51 IPR001005 -
Tsu04g00689 107 CDD SANT 6 47 IPR001005 -
Tsu04g00689 107 PANTHER MYB PROTEIN-RELATED 4 62 - -
Tsu04g00689 107 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00689 Tsu-Chr4 6401933 6403429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00689 4 80 MYB Transcription Factor Family AT5G58850 49.351 7.62e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu04g00689 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00689 K09422 - thj:104810723 89.3521