Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00685 ATGTTTCCTTCTCCCATTGGCCCAATCACTATGATCCCAAACCCTTCATATGAGGCTACACACAACAATGAGTCCCAAAGAGAATCAACCGGTGCTGAAAATCCAATGATGTTTGCACCAAACTATAACAAAATGGAAGCTATGTATGGCCGCCTAAATACTAGCAAAGGAGTTTGGGATTTGTCCAAAAAACATCTCTTTCAGTATGGTGAAACTTCACAATCTCGGGTGGATCCCTCCTTACCACCATTAGTTAAGCCTGAGCATCTAGCAGATCTTTCATCCGATGGTGGCATTAAAAACAAACCCCGAAAAACTGATCAAGGACTTGTTTTTAGTGACCAGAAGCGACAAAAGAGGCGTAAAAAGAATTGTAAAATTCAACACAAGGATCCCAATACAATCAAAGGCCAATGGACTGCAAATGAGAATAGCAATCTTGTCGAATTGGTGGATACCTATGGGTTTGATTGGTCTAAGATAGCTAAGTTTATGAATGGTAGAAACGGGAAACAATGCAGGGAGAGATGGCATAACCATCTTCGACCACAAATTAAGAAAACATCATGGAGCGGAGAGGAGgaaaaaatattgattgaaGCTCATAAGGAAGTTGGAAACAAGTGGACTAAAATTGCAGCACTGTTACCCGAGCGCACTGAGAACGCTATAAAGAACCATTGGAACACTGCTAGACGTAGCCAAACCCGCCTGAACAAGTACAGTTGTAATAGTTCAAAAAACCCGTCAGAACTTCAAAAATACATTAAGGAAATCACTTCTACTAAGGAAGTTGAGAAAGAGCATAATGAAGAGTTGTTGGCTACTCAAGAGGATGAACAACATGGTGGCAATGTGGAAATGGTTTTCAATAATGGTGATGAAGGAATGTCAAGTGATTCTTGGAGAATGGATTATGAGTTTGAAAATGGAATGGAGTTTTTTGTTGAAGTTCCCATGAAGAAGGAAATGGATTTCATGGAGATGATATCTAAAAACCCTTAA 1005 0.394 MFPSPIGPITMIPNPSYEATHNNESQRESTGAENPMMFAPNYNKMEAMYGRLNTSKGVWDLSKKHLFQYGETSQSRVDPSLPPLVKPEHLADLSSDGGIKNKPRKTDQGLVFSDQKRQKRRKKNCKIQHKDPNTIKGQWTANENSNLVELVDTYGFDWSKIAKFMNGRNGKQCRERWHNHLRPQIKKTSWSGEEEKILIEAHKEVGNKWTKIAALLPERTENAIKNHWNTARRSQTRLNKYSCNSSKNPSELQKYIKEITSTKEVEKEHNEELLATQEDEQHGGNVEMVFNNGDEGMSSDSWRMDYEFENGMEFFVEVPMKKEMDFMEMISKNP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00685 334 Gene3D - 126 186 - -
Tsu04g00685 334 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Tsu04g00685 334 PANTHER MYB DOMAIN PROTEIN 100-RELATED 74 281 - -
Tsu04g00685 334 ProSiteProfiles Myb-like domain profile. 131 181 IPR001005 -
Tsu04g00685 334 MobiDBLite consensus disorder prediction 93 115 - -
Tsu04g00685 334 PANTHER MYB PROTEIN-RELATED 74 281 - -
Tsu04g00685 334 Pfam Myb-like DNA-binding domain 139 196 - -
Tsu04g00685 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 185 IPR017930 -
Tsu04g00685 334 SMART sant 135 183 IPR001005 -
Tsu04g00685 334 SMART sant 186 234 IPR001005 -
Tsu04g00685 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 236 IPR017930 -
Tsu04g00685 334 MobiDBLite consensus disorder prediction 72 126 - -
Tsu04g00685 334 SUPERFAMILY Homeodomain-like 133 228 IPR009057 -
Tsu04g00685 334 CDD SANT 189 230 IPR001005 -
Tsu04g00685 334 CDD SANT 139 181 IPR001005 -
Tsu04g00685 334 MobiDBLite consensus disorder prediction 1 34 - -
Tsu04g00685 334 MobiDBLite consensus disorder prediction 15 32 - -
Tsu04g00685 334 Gene3D - 188 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00685 Tsu-Chr4 6367862 6370769 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00685 130 259 MYB Transcription Factor Family AT4G18770 57.576 2.07e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g00685 Myb_DNA-bind_6 5.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00685 K09422 - mtr:MTR_4g088015 312.768