Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00673 ATGTGCAACAAAAATAGTACTGCAacaatttctaaaataaaaacaagatcaGTTACtatgaggaaaaaaaagaaacaaattactAACACAAATTCATGTTCTGTTTCTGTTTCTGTTTCTGTttctccttcatcttcttcttcttcatcttctcttaaaccaaacaaaagaaaaaacagaacaaaaagaaaaaaaccaaaatatcttAGTCTTAGATTGCAACTTTcacaacaaacacaaaaaactcaacaaccaaaaaaaaccaacaaaaaaacccaacaacaacaacaacaaaaactacCTGAATTGAATTATCATGTTTACAATGATGATCTACAAACAGAACAAGACATGCAAGAAGAAAACAACGTAGCTTTACTATTTACATCTGATGGTGGAGCAACATTAAATGGATTATTAGAAGACGAATCGACGGTGGCAACGACGACAACGGAGGAAGAGGAAGAGTCTTTGTCAGTGATGAGGTGTCCGGAGATGGAAGGGTTAGTTAAGAAAGCTATGAGGAAAAGgaatgatgaagaagagagTGAAGAAAGATGGGTTAGTTATTCAGAAGTTGTTGAAGAGAAAAAGGAAATGATGGAGGAAGTGAATAGTTGTATTGGGATTGAAACGATGTCGTTTTTGGGTTCTTTGTCTTTGAAATTGGATCATGATGGGATATTGAATGCTTGGTCTGATAAAGGTTCTCTTTATGTTgttgatggtggtggtgatgagTCTCCACAGACTGTTCCTGATTTGTTCAATGGTTCCAACATCATTCCCAATACATTGTGGGATGGTTATGGTTGTGATGTTAATGGGAACACATGGAAAGTTCCTGATGGGGTTGGAGCTAGCAATAACAATATGAAGGTGAAGGAAGAAATGGGTTGGAAGCTTGGTCAAAGAGAGGCAAGTTTGTTGAGATACAAAGAGAAGAGACAAAGTAGACTCTTCGCTAAGAGGATTCGTTATGAAGTTCGCAAGTTGAATGCTGAAAAACGGCCTAGAATGAAGGTACTACTCTAA 1035 0.2899 MCNKNSTATISKIKTRSVTMRKKKKQITNTNSCSVSVSVSVSPSSSSSSSSLKPNKRKNRTKRKKPKYLSLRLQLSQQTQKTQQPKKTNKKTQQQQQQKLPELNYHVYNDDLQTEQDMQEENNVALLFTSDGGATLNGLLEDESTVATTTTEEEEESLSVMRCPEMEGLVKKAMRKRNDEEESEERWVSYSEVVEEKKEMMEEVNSCIGIETMSFLGSLSLKLDHDGILNAWSDKGSLYVVDGGGDESPQTVPDLFNGSNIIPNTLWDGYGCDVNGNTWKVPDGVGASNNNMKVKEEMGWKLGQREASLLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKVLL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00673 344 MobiDBLite consensus disorder prediction 1 15 - -
Tsu04g00673 344 Pfam CCT motif 305 341 IPR010402 GO:0005515
Tsu04g00673 344 MobiDBLite consensus disorder prediction 55 69 - -
Tsu04g00673 344 MobiDBLite consensus disorder prediction 71 103 - -
Tsu04g00673 344 ProSiteProfiles CCT domain profile. 305 344 IPR010402 GO:0005515
Tsu04g00673 344 PANTHER CCT MOTIF FAMILY PROTEIN 50 341 - -
Tsu04g00673 344 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 50 341 - -
Tsu04g00673 344 MobiDBLite consensus disorder prediction 24 54 - -
Tsu04g00673 344 MobiDBLite consensus disorder prediction 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00673 Tsu-Chr4 6253489 6257816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00673 218 341 C2C2-CO-like Transcription Factor Family AT1G73870 37.879 5.26e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu04g00673 CCT 1.7e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00673 - - gmx:100798231 288.885