LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g00656	ATGAGCTCCAAAAAGAACACACCATCACATGTTATTCTCTTGGCTCACATACTTATAATCATGTCATGTTTACTTTCTAACTCATATTCAGACCCAAGAATCTCACAAGCTGGACTCTACTGTGGTAAACAAAAAGCACCACCAAATTCAAACTATATCCCTAGTTTCATACAAGAAATGGAGAATCTATCACAGATTGTATCAAACCATAATTGGGGAACTCACTTTGTAAATATTTCAGGATCTGTTCCAATTTATGGCTTAGCACAATGTTTTAAAGATCTCTCTCATACTGATTGTCTTCTTTGTTATGCTGCAAGCCGGACTAAGCTCCCTCGTTGTCTCCCTTCGATCTCTGCTCGAATATATCTCGATGGTTGCTTCCTTAGATATGACAATTATAGTTTCTACTTCGAGGAAACTGACCCTTTGAGGGACAGTGTTACCTGCACCTCCTCCTCCGAGAGGTTGGAGGTGCAGAGGGAAAAGAGTATTGTAAAAGTGATTGATGTTGTGGCCGGGGATGCggttgatggtggtggtggattTGCTAAGAAAGAAGTCGAGGGTGTTTACGCCTTAGCACAGTGCTGGAACACTCTTGGGATTCAAGGTTGTAGAGATTGTTTGAAGAATGCTGTGAAAAAAGTAAGAGGTTGTTTGCCAAATAAGGAAGGTAGGGCCTTGAATGCTGGTTGTTATTTAAGATATTCAACACACAACTTTTTCAATGAAGGTGTAAAAGATGGTGGGAATGAATCTTTAAGCAAAGGAGCTGTAATAGCAGCAGTGCTAGCAACATCTGCAATTATTCTGCTTGCTCTCTCTGCCACTTTTGCAGTGTTCAAAAAATTGTCAAATctaaaaaaagAAAAAAATAATCTGGATCAAATTTCATCTTCCATAACAAATTCTAGTTTGAATTACAAATACGAAATCCTCGAGAAAGCCACGGATTATTTCAATTCTTCTAGACAAATAGGCCAAGGAGGATCAGGTTCAGTTTTCAAAGGTATTCTCCCTAACGGAAGTGTCGTTGCGGTAAAGAGATTGGTATTCAATAATAGGCAATGGGTGGATGAGTTCTTCAATGAAGTAAATTTGATTAGTGGAATTGAACACAATAATCTTGTCAAATTATTGGGTTGTAGCATTGAAGGACCTGAGAGTTTACTTGTATATGAGTACTTACCCAACAAGAGTTTAGATCAATTTCTATTTGaaAATAGCAGAACTCAAATTCTAAATTGGAAGCAACGGCTTAACATCATTCGTGGAACAGCGGAAGGGCTTGCTTATCTTCATCAAGGAACAAAAAAACGAATCATCCATAGAGATATCAAAAGCAGCAATGTTCTTCTAGATGATAATCTTAGTCCTAAGATTGCAGATTTTGGCCTTGCGCGTTGTTTTGCTGCGGATAAAACACATTTGAGTACCGGAATTGCTGGAACACTTGGTTACATGGCTCCTGAGTACCTAATTCGAGGACAACTTACAGATAAAGCCGATGTCTATAGTTTTGGAGTACTTGTCCTAGAGATTGTAACTGGCAGAAGAAATAATGTCATCAGAGAGGACTCTGGATCAGTTCTACAAACTGTTTGGAAACTTTACAGATCAAACACATTGGTTGAGAGTGTTGATTCAAGCTTAGGAGATGATTTTCCTGAAGCTGAGGCATCAAGGGTGTTTCGTATCGGTTTGCTTTGCACACAAGCTTCTGCTTCTCTTAGGCCATCCATGGACCAAGTTGTTCAAATGTTAAGAAATTCAGATTTAGATGTTCCTACACCAAATCAACCACCATTTCTGAACACTGCAATGGTAGACTCAGACAGCTCCATTAGGTCTTATAGTACAAACAGATTTAGATGTTCACACAGTTACTCAGAGTCCACTTGTTCCCGCAACTCAGACGAGCCATTGAAAAGCGAAGAACCAACTGTCCAAACTTGA	1959	0.3854	MSSKKNTPSHVILLAHILIIMSCLLSNSYSDPRISQAGLYCGKQKAPPNSNYIPSFIQEMENLSQIVSNHNWGTHFVNISGSVPIYGLAQCFKDLSHTDCLLCYAASRTKLPRCLPSISARIYLDGCFLRYDNYSFYFEETDPLRDSVTCTSSSERLEVQREKSIVKVIDVVAGDAVDGGGGFAKKEVEGVYALAQCWNTLGIQGCRDCLKNAVKKVRGCLPNKEGRALNAGCYLRYSTHNFFNEGVKDGGNESLSKGAVIAAVLATSAIILLALSATFAVFKKLSNLKKEKNNLDQISSSITNSSLNYKYEILEKATDYFNSSRQIGQGGSGSVFKGILPNGSVVAVKRLVFNNRQWVDEFFNEVNLISGIEHNNLVKLLGCSIEGPESLLVYEYLPNKSLDQFLFENSRTQILNWKQRLNIIRGTAEGLAYLHQGTKKRIIHRDIKSSNVLLDDNLSPKIADFGLARCFAADKTHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEIVTGRRNNVIREDSGSVLQTVWKLYRSNTLVESVDSSLGDDFPEAEASRVFRIGLLCTQASASLRPSMDQVVQMLRNSDLDVPTPNQPPFLNTAMVDSDSSIRSYSTNRFRCSHSYSESTCSRNSDEPLKSEEPTVQT	652

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g00656	652	ProSiteProfiles	Gnk2-homologous domain profile.	34	136	IPR002902	-
	Tsu04g00656	652	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	21	636	-	-
	Tsu04g00656	652	Gene3D	Transferase(Phosphotransferase) domain 1	397	597	-	-
	Tsu04g00656	652	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42	21	636	-	-
	Tsu04g00656	652	ProSiteProfiles	Gnk2-homologous domain profile.	143	242	IPR002902	-
	Tsu04g00656	652	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	23	-	-
	Tsu04g00656	652	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	442	454	IPR008271	GO:0004672\|GO:0006468
	Tsu04g00656	652	MobiDBLite	consensus disorder prediction	630	652	-	-
	Tsu04g00656	652	Pfam	Protein tyrosine and serine/threonine kinase	324	589	IPR001245	GO:0004672\|GO:0006468
	Tsu04g00656	652	ProSitePatterns	Protein kinases ATP-binding region signature.	327	349	IPR017441	GO:0005524
	Tsu04g00656	652	CDD	STKc_IRAK	327	589	-	-
	Tsu04g00656	652	Pfam	Salt stress response/antifungal	44	134	IPR002902	-
	Tsu04g00656	652	Pfam	Salt stress response/antifungal	186	239	IPR002902	-
	Tsu04g00656	652	SMART	serkin_6	321	589	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g00656	652	Gene3D	-	149	242	IPR038408	-
	Tsu04g00656	652	Gene3D	-	36	136	IPR038408	-
	Tsu04g00656	652	Gene3D	Phosphorylase Kinase; domain 1	281	396	-	-
	Tsu04g00656	652	ProSiteProfiles	Protein kinase domain profile.	321	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g00656	652	SUPERFAMILY	Protein kinase-like (PK-like)	304	626	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g00656	Tsu-Chr4	6114572	6118193	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g00656	5	486	Receptor kinase-like Gene Family	AT5G40380	55.901	0.0	543

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Tsu04g00656		PK_Tyr_Ser-Thr	1.7e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g00656	-		-	gmx:100790404	932.554