Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00646 ATGGAGTCACCTGTTGATGGAGTTGAGTATTTGCCAGAAGTTTATAACAATTCTGTTTCTGGCATAATAGATCACAATCCTCCTTCGACATCTGGTGTTCCGCACTCTTCTCGTCCGCCTTTGATGGCATCATCGAGAAATCAAGGAAGGATGAAAGATACTTATCAGGAACCTAGCCATATCGAAACTTTTGAAAGTTGTTTGGCAAAGAATATTTCCACAATCGAAACAAAATTGTGTATCAGTGATGATTCAACTAATCACAACTCTGACGAGATATTAGAATCTGAGAATTGCATATTAGGTTCGTCAAAAGGATTTGTGGATCAGGCAAACTCGGAGATTATGTTTTGCTCAAGTCCGCAGAGTAGTTTATACTCTGCCGCTGCTTATTCAGAAGCCAAAGAAAGTTTCACCAATACCGGAATCAATGAATCTGTTAGTGTTGATAAGTCGGTTGAAAGCGGAGAGGTTACTAATTCAGGGGAGAGCAGGAAGACGAGTATCTGTAGAGGGAGTACCGGAAGTGATGTTAGCGATGAAAGCAGCATCAGTAGTTTGAGCAGTTCGTTGTATAAACCACATAAAGCAAATGATGTAAGATGGGAAGCAATTCAAGCTATCCGAGTTCGAGACGGTGGATTGGAAATGAGACATTTCAGGTTGTTGAAGAAATTGGGATGTGGAGATATAGGAAGTGTATATCTAGCAGAGTTAAGTAGCACAAAGACTTGTTTTGCTATGAAAGTAATGAACAAGACTGAATTGTCGAGTCGCAAGAAACTTCCCAGGGCTCagacagagagagagatatTGCAGTCTCTAGATCATCCATTTCTACCTTCATTGTACACACACTTTGAGACGGAGTCATTCTCTTGCTTGGTTATGGAGTTTTGTCCTGGTGGAGATCTCCATGCTCTCCGGCAAAGACAACCTGGGAAGTATTTTTCAGAACATGCTGCAAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAATCATCTACAGAGACCTCAAACCCGAGAACGTGTTGGTGAGAGAAGATGGTCACATAATGCTATCAGATTTTGACCTCTCTCTAAGGTGCGCCGTCAGTCCGACTCTAGTAAAATCAGCAAACTCTAATTTAGAGACAAAAAGCTCAGGATACTGTGTTCAACCCGCTTGCATCGAACCAACTTGTGTTATTCAGCCAGACTGCATCAAACCTTCTTGTTTCACGCCACGTTTTCTACAAAGCAAgtccaagaagaaagaaaagaagttgaAACCTAAGAATGACGTGCACAATCAGGTGACACCTCTGCCCGAGCTTATGGCCGAGCCAACAAATGCCCGATCAATGTCCTTCGTAGGCACGCACGAGTACCTCGCGCCTGAAATCATCAAAGGTGAAGGTCATGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTATACGAGCTTTTGTTCGGTAGAACTCCATTCAAAGGTTCAGCGAATCGGGCAACTTTATTTAATGTAGTTGGGCAGCCCTTGAGATTTCCGGAATCTCCAAGTGTTAGCTTTGCTGCTAGGGACTTGATTAGGGGTTTACTTGTGAAAGAGCCTCAACATCGTCTTGCTTATAGACGCGGAGCTACGGAGATAAAACAACATCCAttctttcaaaatattaactGGGCGCTGATCCGTTGCGCCACTCCTCCAGAAGTGCCGAGACAAGCCATGAAAGCAGCACTCACACCTGAGAAGAAGCCGCCTGGAGTGAAGCCTTCTGGTAACTATTTAGATATCGATTTCTTTTGA 1815 0.4226 MESPVDGVEYLPEVYNNSVSGIIDHNPPSTSGVPHSSRPPLMASSRNQGRMKDTYQEPSHIETFESCLAKNISTIETKLCISDDSTNHNSDEILESENCILGSSKGFVDQANSEIMFCSSPQSSLYSAAAYSEAKESFTNTGINESVSVDKSVESGEVTNSGESRKTSICRGSTGSDVSDESSISSLSSSLYKPHKANDVRWEAIQAIRVRDGGLEMRHFRLLKKLGCGDIGSVYLAELSSTKTCFAMKVMNKTELSSRKKLPRAQTEREILQSLDHPFLPSLYTHFETESFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSANSNLETKSSGYCVQPACIEPTCVIQPDCIKPSCFTPRFLQSKSKKKEKKLKPKNDVHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNINWALIRCATPPEVPRQAMKAALTPEKKPPGVKPSGNYLDIDFF 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00646 604 PANTHER FLIPPASE KINASE 1-RELATED 82 604 - -
Tsu04g00646 604 Pfam Protein kinase domain 221 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00646 604 Pfam Protein kinase domain 455 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00646 604 CDD STKc_phototropin_like 218 578 - -
Tsu04g00646 604 Gene3D Transferase(Phosphotransferase) domain 1 304 371 - -
Tsu04g00646 604 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 82 604 - -
Tsu04g00646 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 341 353 IPR008271 GO:0004672|GO:0006468
Tsu04g00646 604 Gene3D Phosphorylase Kinase; domain 1 218 303 - -
Tsu04g00646 604 ProSiteProfiles Protein kinase domain profile. 220 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00646 604 SUPERFAMILY Protein kinase-like (PK-like) 194 578 IPR011009 -
Tsu04g00646 604 Gene3D Transferase(Phosphotransferase) domain 1 452 576 - -
Tsu04g00646 604 MobiDBLite consensus disorder prediction 149 184 - -
Tsu04g00646 604 SMART serkin_6 220 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00646 Tsu-Chr4 6011482 6016008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00646 163 604 AGC Kinase Gene Family AT5G47750 76.149 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Tsu04g00646 Pkinase 3.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00646 K08286 - gmx:100802402 923.694