Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00641 ATGTCCTCCTCCTTCTCCATCATTTCAAAATTACTTCCTTCTTCTCCACATTCCAACATTCACAACTTCCACACATTCTTCATCTCCAACCACAACAAACCCCAAACCACTTTTCTCTTTACCAAATTCTTCTCCGTCAGCACCCTCAAAATCCGTTGCGCTCCACATGATTCCTCTAACTTCCATAGCATTTTCGCCAAACCAATTTTACCCGGAGGCGATTGGTGGACATTACCGAAACATCAGGAAGAAGACCATGCAGAACCGATTGCGGCGATGCTCGCTCTCAGACGAATGTGGGAGTTGATTGCCGATGAGCGCTTGGTCGCGCTTGGAGCGTTCGGGTCTCTTGTCATTGCTGCACTTTCAGAAATCACCATGCCAAGTATATTGGCAGCATCAATATTTTCAGCACAGAGTGGTGAGGCTGTGGCATTCTCTAGGAATGCAATGTTTTTGGTTCTTCTATGTTTTACTTCAGGGATATGCAGTGGTTTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCGTCTGCGAGAAAACTTGTATGCAACCATTCTTTTTCAGGACATATCttattttgataaagaaaaagttgGTACCTTGACAAGCAGGCTCGCCGCAGATTGTCAACGGCTTTCGCATGTTATAGGAAATGATCTTCAGTTGATATTACGCAACACTTTGCAGGGAACAGGAGCAATAATTAATTTACTGGCTTTGTCATGGCCTCTAGCATTATCTGCATTGATGATTTGTTCTGTGTTATCTGCAATTTTCCTGGTTTATGGCAGGTATCAAAGAAAAGCAGCAAAGTTAACCCAAGATTTCACAGCTTGTGCCAATGACGTAGCTCAGGAGACACTTTCTTTGGTAAGAGTTGTCCGAGTGTATGGAACCGAAAAAGAAGAATTTCAAAgGTACAATCAGTGGCTACAAAAATTAGCATTTATTAGCGGTCGAGAGAGTGTGGCTAATGGTTTCTGGAACCTGAGTTTTAACACTCTTTATCGGTCAACTCAGATAGTTGCAGTGATTTTTGGCGGAATGTCTATTCTCAGTTGTCATGTAACTGCTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTATGCTGCTTGGAGGGTGACAAACAGCTTATCATCATTACTGCAGTCCATTGGAGCATCTGAACAAATTTTCCAATTGATGAATCTTTTGCCTTCTGACCAATTCTTAGTGAAAGGAATTAAGTTGCAGAGGTTAATAGGCCATATTCAGTTTGTAAATGTATCATTTCATTATCCAGCAAGGAGTATGATGCCTGTTCTAAATCACTTAAACTTCTCTGTAAAACCAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTAATCAACCTTTTACTTCGTCTCTATGAGCCTAGTAGCGGCCAGATATGTGTTGATGGTATCCCTCTGAAGGAGTTGGATATCAGGTGGCTGAGGCAGAACATCGGATATGTTTCACAGGAACCTCATATATTTCACATGGACATAAAGTCAAACATAAAATATGGTTGCCCTAGGAACATAAATCAAGAAGATGTTGAACAGGCAGCAAAACTGGCCTACGCCCATGACTTTATTTCGTCACTTCCTAATGGCTATGAAACCCTCGTTGATGACAATGTACTTAGCGGTGGACAAAAGCAGCGAATCGCCATTGCAAGGGCCATTCTTAGGGACCCGGTTATTATGATTCTTGACGAACCAACCAGTGCCTTGGATTCTGAAAGTGAACATTACATCAAGGAGGTATTGTATGCATTCAAAAATGAATCTAAATCAAGAACCATCATGATCATAGCACATAGGCTTTCTACTGTAAAAGCTGCTGACAGGATCATTGTTATGGACAATGGTCAGATTATTGAGACGGGTAACCATGAAGAGCTTATAGTCAAGAATGGACTCTATGCTaagttaaataaatttcaagCAGATATTGTAACTTGA 2013 0.4064 MSSSFSIISKLLPSSPHSNIHNFHTFFISNHNKPQTTFLFTKFFSVSTLKIRCAPHDSSNFHSIFAKPILPGGDWWTLPKHQEEDHAEPIAAMLALRRMWELIADERLVALGAFGSLVIAALSEITMPSILAASIFSAQSGEAVAFSRNAMFLVLLCFTSGICSGLRSGCFGILNVTLVKRLRENLYATILFQDISYFDKEKVGTLTSRLAADCQRLSHVIGNDLQLILRNTLQGTGAIINLLALSWPLALSALMICSVLSAIFLVYGRYQRKAAKLTQDFTACANDVAQETLSLVRVVRVYGTEKEEFQRYNQWLQKLAFISGRESVANGFWNLSFNTLYRSTQIVAVIFGGMSILSCHVTAEQLTKYVLYCEWLIYAAWRVTNSLSSLLQSIGASEQIFQLMNLLPSDQFLVKGIKLQRLIGHIQFVNVSFHYPARSMMPVLNHLNFSVKPNQVIAIVGLSGSGKSTLINLLLRLYEPSSGQICVDGIPLKELDIRWLRQNIGYVSQEPHIFHMDIKSNIKYGCPRNINQEDVEQAAKLAYAHDFISSLPNGYETLVDDNVLSGGQKQRIAIARAILRDPVIMILDEPTSALDSESEHYIKEVLYAFKNESKSRTIMIIAHRLSTVKAADRIIVMDNGQIIETGNHEELIVKNGLYAKLNKFQADIVT 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00641 670 ProSitePatterns ABC transporters family signature. 564 578 IPR017871 GO:0005524
Tsu04g00641 670 Gene3D ABC transporter type 1, transmembrane domain 91 410 IPR036640 GO:0005524|GO:0016021
Tsu04g00641 670 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 426 664 IPR003439 GO:0005524
Tsu04g00641 670 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 392 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00641 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 665 IPR027417 -
Tsu04g00641 670 PANTHER ABC TRANSPORTER B FAMILY 52 668 - -
Tsu04g00641 670 SUPERFAMILY ABC transporter transmembrane region 97 408 IPR036640 GO:0005524|GO:0016021
Tsu04g00641 670 Pfam ABC transporter 444 592 IPR003439 GO:0005524
Tsu04g00641 670 PANTHER ATP-BINDING ABC TRANSPORTER 52 668 - -
Tsu04g00641 670 Pfam ABC transporter transmembrane region 116 373 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu04g00641 670 Gene3D - 416 668 IPR027417 -
Tsu04g00641 670 CDD ABC_6TM_TAP 113 400 - -
Tsu04g00641 670 SMART AAA_5 453 641 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00641 Tsu-Chr4 5974668 5982457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00641 181 665 Calmodulin-binding Proteins AT2G36910 35.671 3.10e-77 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00641 - - aprc:113857420 1014.99