Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00636 ATGGCATCTTCATCAAGTTGCTACTCAAATTCACCATGTGCTGCCTGCAAATTTTTAAGAAGGAAGTGCATGCCAGATTGTATATTTGCTCCATATTTTCCACCAGAAGAGCCACAAAAATTTGCAAATGTTCACAAAATATTTGGTGCAAGTAATGTAAGTAAACTTTTGAATGAAGTTCAAGCACATCAAAGAGAAGATGCAGTGAATTCTCTTGCTTATGAAGCTGAAGCAAGAATTAAAGATCCTGTTTATGGTTGTGTTGGTGCCATTTCAGTTCTTCAAAGACAAGTTATTAGACTTCAAAAAGAACTTGATGCTACAAATGCCGATTTGATTCGATATAGTACTTGCACTGATCATCATATAATGCCAAATAATCATCATCAAGATCATCAAGTTACAAGGATTCATGAAGATGGAGGAGGTTCTTCTCTTGGTCCTCCTGCAAATTTTTACTATCCTTCTCCTTGGAACAATGATCCACTTGGAGATGGTAATTATCACACAGGAGGAGGtgataatatataa 531 0.3578 MASSSSCYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQAHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYSTCTDHHIMPNNHHQDHQVTRIHEDGGGSSLGPPANFYYPSPWNNDPLGDGNYHTGGGDNI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00636 176 Coils Coil 91 111 - -
Tsu04g00636 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 163 - -
Tsu04g00636 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 5 163 - -
Tsu04g00636 176 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
Tsu04g00636 176 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00636 Tsu-Chr4 5946339 5946869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00636 1 127 AS2 family AT5G63090 80.315 8.88e-69 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g00636 LOB 2.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00636 - - gmx:100800167 267.7