Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00628 ATGGGAAGGAATTCTTCATTGCAACTCATAATTGTATGCTTCAATATTGTCTTGCATTTGTTAGCATGTTCAATGATGCAAAGATGCCACTGCTTGGTGCCTCAAAGGTCCATTATGAGCATAGGTGTTGTGCTTGATTTGGATTCATTAATGGGAAAACAACAGAAGATAGCAATGGAAATTGCAGTGCAAGAGTTCAACAACCAATTAAGTTTTTCCAAACTGGATTTGCAGATAAAAGATTCACATGGAAATTCTGCTCAAGTAATTGCTGGTGTTATGGATCTCTCATTGAGCAACCAAGTGTTGGCCATCACAGGAACTATTACACACAATGAAGCAGCTCTAGCAAGTGAATTCAGAAACACCATAAAGAACATTCCTATCATGTCTCTAACTTCTTTTACAGGCAGACAAGAATTATTATCATCAAGATTGCCACATTTCATCCAAGTAGGGGATGATATTAACCTTAATATGCAATGCATTGTAGCAATTGTAGGATATCTCAAATGGAAAAAGGTAACAGTAATTTATGAACATAATAATGACTTTTCCTCTGATCAAGGAAGGATACTACTTAGTCTCTCTTATTCTCTTAAACTAGTTGGTTCTGAAATTGATAGCCATTTAGCTTTTCCTTCTTTATCCACTCTTTTAGATCCAAACACTACAATTGAAAATGAGCTTAATAAGCTGAAAAGGAAGAGTAATAGGGTCTTCTTGATTGTTCATTCTTCTTTGGAGCTGGCTAACATGCTTTTTGAGAAAGCAAATCAAATAGGTTTGATGGAAAAAGGATCTGTTTGGATTATCCCAAATATGGTTGCTGGTCTTCTTGATTCAGTAAACTCTTCTGTTATATTCAACATGCAAGGTGTTGTAGGATTTAAAACATACTTTATGGAAATGAATGAGGCTTTTAGagagttcaaattcaaatttcaaagaaGGTTTGCACTAGAATACCCTAAAGAAGATAACTTTAACCCAAGTATCTTTGCACTTCAAGCATATGATGCAACTTGGGCTATTTTTGAGGCTGCAAATAAGTCATCATCACAAGGAAAGTTTAGCCTTGAACAATTCTCAGAAAAAATTTTGTCCAATAAATTTGACAGACTAAGTAGAAACACTTTCTCAAAGAATAGACCATTGATGCAATCACAATCctttaatataataaatgtgaTAGGGAAAAGTTATAGAGAAATGGCATTTTGGACTCCAACACTCGGTTTTTCCAAGAGCTTATTTAGTCATCAATTAATGGagaagaaaaacacaaacaatGATCATGACTCTAATGGAGTTTTCAGCACAGTTTATTGGCCTGGAAACATGCAATCGGTTCCTAAGGGATGGATTCACAGTAATGAGGAAAGATCATTGAAAATAGGAGTACCTTCCAATGGTGCCTTTACTCAGTTTGTGAATGTAACAAATGACAAGAGTATGAACGGATCTTCAATCACTGGTTTCTCTATTACTGTCTTTAAAGAAGCTGTCAAGCTTTTACCATATGATTTACATTACAATTTTGTTCCTTTCAATGGCTCATACGACGAAATGGTTCATCAGGTCCACAATAAAGCATTGGATGGTGCGGTTGGTGATACAGGGATAATGGCATATAGATATAGTTTAGTTGACTTCTCACAGCCTTATATTGAATCTGACCTCCACATGGTGGTTACTGAACAACCAGCAAAATCAAAAACATGGAAGTTTTTGGATGCCTTTACAAAAGAGATGTGGCTTTTGATAGCAGCTATTCATATTTTTGTAGGGTTTGTTATTTGGTTGATTGAACGGGAAGATAATCCAGATCTAAGGGGAATTGGTTCTATGCTATGGTTTTTAGTTACTGTACTATTTTATGCACACAGAGAACCGATAAGAAGACCGTTGGCTCGAATTGTGCTGGCACCGTGGTTATTTGCTATTTTCATTGTGACAAATAGTTTCACAGCAAGTTTGACATCCATAACTATATCACAAGCAAAGCCATCTGTGTTAGATATACAAACCCTTAAAGAAAGAAACTCGCCAGTTGGGTGTAATGGAAATTCATTCATTGTgaattatttgacagaagtacTAAAGTTCAAGCCTGAGAACATTAGGAAAATAAATTCCATCAGTGACTACCCTGCTGCCTTTGAGAACAAGGATATAGAAGCCGCTTTCTTCGTCGGGCCACATGCTAGAGTCTTTCTAGCAAAGTACTCGTGTAAGGGACTAATCAACGCAGGGAACGTTTTTCGACTTGGTGGCTTTGGCTTTGTATATCCAAAGGGTTCTAGTTTGGCTACTGATATATCAGAAGCATTGCTGAATATGATAGAGAGTGGGCAAATAAAAGAGCTAGAAAAAGATATGTTGAATAAGATAAAGAATGAAGGCAAAGCCAATTGTTCTTCAAAGGAAAAAAAGGAGAAAGATAATTCATCAATTGACATTCCACCTTTCCTTGGTTTATTTTCCATCTGTTCTTCTTTTGCTATTCTTGCTTTGTCATATCACACAATTTGTTTGTTGGTGAAGAAGAACTTAGAGACCTTGACATACCTCATAGTATTAACATTAATTCAATTGTGGAGATTATGGAAATGGACAACCAAATACTTCTCCCGGATCATGAGAAGCGTAAGCAGTTGCATAGAAACAAGAAAGGCAGAAGAGGGTGTCAATAATAGCCAGCAAAACCCAGTGTTAGTGGTTGCTCATGCTTCATCATGA 2742 0.3552 MGRNSSLQLIIVCFNIVLHLLACSMMQRCHCLVPQRSIMSIGVVLDLDSLMGKQQKIAMEIAVQEFNNQLSFSKLDLQIKDSHGNSAQVIAGVMDLSLSNQVLAITGTITHNEAALASEFRNTIKNIPIMSLTSFTGRQELLSSRLPHFIQVGDDINLNMQCIVAIVGYLKWKKVTVIYEHNNDFSSDQGRILLSLSYSLKLVGSEIDSHLAFPSLSTLLDPNTTIENELNKLKRKSNRVFLIVHSSLELANMLFEKANQIGLMEKGSVWIIPNMVAGLLDSVNSSVIFNMQGVVGFKTYFMEMNEAFREFKFKFQRRFALEYPKEDNFNPSIFALQAYDATWAIFEAANKSSSQGKFSLEQFSEKILSNKFDRLSRNTFSKNRPLMQSQSFNIINVIGKSYREMAFWTPTLGFSKSLFSHQLMEKKNTNNDHDSNGVFSTVYWPGNMQSVPKGWIHSNEERSLKIGVPSNGAFTQFVNVTNDKSMNGSSITGFSITVFKEAVKLLPYDLHYNFVPFNGSYDEMVHQVHNKALDGAVGDTGIMAYRYSLVDFSQPYIESDLHMVVTEQPAKSKTWKFLDAFTKEMWLLIAAIHIFVGFVIWLIEREDNPDLRGIGSMLWFLVTVLFYAHREPIRRPLARIVLAPWLFAIFIVTNSFTASLTSITISQAKPSVLDIQTLKERNSPVGCNGNSFIVNYLTEVLKFKPENIRKINSISDYPAAFENKDIEAAFFVGPHARVFLAKYSCKGLINAGNVFRLGGFGFVYPKGSSLATDISEALLNMIESGQIKELEKDMLNKIKNEGKANCSSKEKKEKDNSSIDIPPFLGLFSICSSFAILALSYHTICLLVKKNLETLTYLIVLTLIQLWRLWKWTTKYFSRIMRSVSSCIETRKAEEGVNNSQQNPVLVVAHASS 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00628 913 Pfam Receptor family ligand binding region 56 362 IPR001828 -
Tsu04g00628 913 CDD GluR_Plant 464 795 - -
Tsu04g00628 913 Gene3D - 157 331 - -
Tsu04g00628 913 Gene3D - 333 462 - -
Tsu04g00628 913 SUPERFAMILY Periplasmic binding protein-like I 39 455 IPR028082 -
Tsu04g00628 913 Gene3D - 759 792 - -
Tsu04g00628 913 Pfam Ligand-gated ion channel 793 831 IPR001320 GO:0015276|GO:0016020
Tsu04g00628 913 SUPERFAMILY Periplasmic binding protein-like II 440 792 - -
Tsu04g00628 913 PANTHER GLUTAMATE RECEPTOR 35 879 - -
Tsu04g00628 913 SMART GluR_14 463 797 IPR001320 GO:0015276|GO:0016020
Tsu04g00628 913 Gene3D - 660 758 - -
Tsu04g00628 913 Gene3D - 463 587 - -
Tsu04g00628 913 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 879 - -
Tsu04g00628 913 Pfam Bacterial extracellular solute-binding proteins, family 3 489 792 IPR001638 -
Tsu04g00628 913 Gene3D - 35 156 - -
Tsu04g00628 913 PIRSF IGluLR_plant 4 859 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00628 Tsu-Chr4 5843689 5848848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00628 38 842 Ion Channels AT2G17260 29.074 3.56e-101 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00628 - - mtr:MTR_5g059920 1330.85