Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00627 ATGGAAAGGAAATTTTCATTGAAACtcaatatttgtttcattgttaTGCAATTGTTAGCATGTTCAAGAGTGCAAAAAGGGCACTGCTTAGTGCCACAAAGGTCCATTATAAGCATTGGTGCTGTTCTTGATTTGGTTTCATTAATGGGAAAACAACAGAAGATAGCAATGGAAATTGCAGTTGAAGAGTTCAACAACCATTTGAGTTCTTCTAAACTTGATTTGCAGATAAAAGACTCACATGGAAATTCTGCTCAAGTAATTGCAAGTGTTATGGATTTCTCAAAGATCAACAAAGTGCAAGCCATCATAGGAACTATTACACACAATGAAGCAACACTAGCAAGTGAATTAAGTGACACCATAAACAACATTCCTATCATGTCTCTAACTTCATTTGCAAGTAAACCACAATTATCATCTCCTAAATTGCCACATTTCATCCAAGTAGGAGATGATATTAACCTTAACATGCAATGCATTGCATCAATTGTAGGAAAATTCAAATGGAAAAAAGTGACAGTAATTTATGAACTTAACAATAATGACTTTTCCTATGATCCAGGAATACTACTTAGTCTCTCTTATTCTCTTAAACTTGTTGGTTCTGTGATTGATAATCACTTAGCTTTTCCTTCACTTTCAACTCTTTCAAATCCAAAATCTACAATTGAAAATGAGCTTAATAAGCTGAAAAAAGAGACTAATAGAGTCTTCTTGATTGTTCATTCTTCTTTAGAGCTAGCCAACATGCTTTTTGAGAAAGCAAAACAAATAGGTTTGATGGAAAAAGGTTCTGTTTGGATTATACCAAATGAAGTTTCTGGTCTTCTTGATTCAGTTAACTCTTCTGTTATCTTCAACATGCAAGGTGTTATTGGATTTAAAACACATTTCATGGAAATGAATGAGGGtttaagaaaatttaaattcaaattccaaAGAAAGTTTGCATTAGAATATCCTGAAGAAGATAACATTAGCCCAAGTATCTTTGCATTTCAAGCATATGATGCAACTAAGGCTTTTTTTGAGGCTTCAAATAAGTCATCATCACAAGGAAAATTCATCCTTGACAAAGAATTCTCAAAGAATGGACAATTGTTGCATTCACCAACCTTCAACATTATTAATGTGATAGGGAAAAGTTATAGAGAAATGGCATTTTGGTCACCAAAACTTGGTTTTTCCAAGAACATTGTTAGCGataattatgatgatgatgattctgatGGAGTTTTCGACGCGGTTTATTGGCCAGGAGACATGAAATCCATTCCTAAGGGTCACAATAAAGAGGAAAGGAATTTGACAATAGCTATACCTTCCAATGGTGCTTTTTCTCAGTTTGTGAATATGAAATATGATCATAACAAAAATGTAACTAAATTTACTGGTTTTTCAATCAAAGTCTTTGAAGCAGCTGCGGGACGTTTACCTTATGTTTTACATTACAATTTTTCTCCCTTTAATGGTTCATATGATGAAATGGTTGATCAAGTCTATAATAAGACATTGGATGCTGCTGTTGGTGATACATCAATAGTGGCATATAGATATCATCTAGTGGACTTCTCACAACCTTATGTTGAATCCGGCCTTCATATGGTGGTTACTGAAGAACCAGCAAAATCAAAAACATGGAAGTTTTTGGATGCCTTTACTAAAGAGATGTGGCTTATGATGATAGCTATGCATATTTTTGTGGGATTTGTTATTTGGGTGATTGAAAGAGAAGTAAATGAAGATTTAAGGGGATTTGGGTCCATGCTTTGGTTTTTAGTCACTGTACTATTTTATGCACATAGAGAGCCAATAAGAAGACCCTTAGCTAGAATTGTGCTGACACCATGGTTACTTGCTATTTTCATTGTGACAAATAGTTTCATAGCAAGTTTAACATCCATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATGTTCAGACCCTTAAAGAAAGAAATTCTACAATTGGTTGTGATGGGAATTCCTTCATTGTCAAGTATTTGACTGATGTACTAAATTTCACGAAAGAGaacattaagaaaataaattccATGAGTGACTACCCTGCTGCCTTTGAGAACAAGGAAATAGAAGCCGCCTTCTTTGTCGCGCCTCATGCTAAAGTTTTTCTAGCAAAGTACTCATGTAAGGGCTTCATCAAAGCAAAGGACACTTACAGACTTGGTGGCTTCGGTTTTGTGTTTCCAAAAGGTTCGAGTCTTGCTGCAGATATATCGGAGGCATTGTTGAATATGATAGAAAGTGGAGAAACAGAACAGCTAGAAAAAGATATGTTGAATGAGATTGAGAAAGAAAGCAAATTTAATTGTACTTCTTCAGAGAGCAAGGGAAAAAGCAACACAATGATAGGTCTTTCGCCTTTCGTTGGCTTGTTTTCGATCTGTTCTACTTTTGCTGGTCTTGCTTTGTCATATCACGTGATTGGTTTGTTGGTGAAGAATGTAGACACTTTGACAAGCCACATAGTATTGACATTATCGCAGTTATGGAGAATAGGGAGATGGACAACCAACTTTTTTGCTAGGTGTTGTTCGAAACTCCGATCGATAATTATTAGAAATTGCACAGAAACAAGAACTGCAGAAGAGAATGTGACAAATAGCCAGCAAATGCCAGTTGTGATTGAGCTTGTTGATAGTGTATTAGCTGCTCATGCTTCATGA 2691 0.3452 MERKFSLKLNICFIVMQLLACSRVQKGHCLVPQRSIISIGAVLDLVSLMGKQQKIAMEIAVEEFNNHLSSSKLDLQIKDSHGNSAQVIASVMDFSKINKVQAIIGTITHNEATLASELSDTINNIPIMSLTSFASKPQLSSPKLPHFIQVGDDINLNMQCIASIVGKFKWKKVTVIYELNNNDFSYDPGILLSLSYSLKLVGSVIDNHLAFPSLSTLSNPKSTIENELNKLKKETNRVFLIVHSSLELANMLFEKAKQIGLMEKGSVWIIPNEVSGLLDSVNSSVIFNMQGVIGFKTHFMEMNEGLRKFKFKFQRKFALEYPEEDNISPSIFAFQAYDATKAFFEASNKSSSQGKFILDKEFSKNGQLLHSPTFNIINVIGKSYREMAFWSPKLGFSKNIVSDNYDDDDSDGVFDAVYWPGDMKSIPKGHNKEERNLTIAIPSNGAFSQFVNMKYDHNKNVTKFTGFSIKVFEAAAGRLPYVLHYNFSPFNGSYDEMVDQVYNKTLDAAVGDTSIVAYRYHLVDFSQPYVESGLHMVVTEEPAKSKTWKFLDAFTKEMWLMMIAMHIFVGFVIWVIEREVNEDLRGFGSMLWFLVTVLFYAHREPIRRPLARIVLTPWLLAIFIVTNSFIASLTSITISQVKPSVLDVQTLKERNSTIGCDGNSFIVKYLTDVLNFTKENIKKINSMSDYPAAFENKEIEAAFFVAPHAKVFLAKYSCKGFIKAKDTYRLGGFGFVFPKGSSLAADISEALLNMIESGETEQLEKDMLNEIEKESKFNCTSSESKGKSNTMIGLSPFVGLFSICSTFAGLALSYHVIGLLVKNVDTLTSHIVLTLSQLWRIGRWTTNFFARCCSKLRSIIIRNCTETRTAEENVTNSQQMPVVIELVDSVLAAHAS 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00627 896 PANTHER GLUTAMATE RECEPTOR 34 854 - -
Tsu04g00627 896 Gene3D - 430 559 - -
Tsu04g00627 896 Gene3D - 32 155 - -
Tsu04g00627 896 SMART GluR_14 436 770 IPR001320 GO:0015276|GO:0016020
Tsu04g00627 896 Pfam Receptor family ligand binding region 54 364 IPR001828 -
Tsu04g00627 896 CDD GluR_Plant 437 768 - -
Tsu04g00627 896 SUPERFAMILY Periplasmic binding protein-like II 432 765 - -
Tsu04g00627 896 SUPERFAMILY Periplasmic binding protein-like I 34 429 IPR028082 -
Tsu04g00627 896 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 854 - -
Tsu04g00627 896 Gene3D - 156 327 - -
Tsu04g00627 896 Pfam Bacterial extracellular solute-binding proteins, family 3 462 765 IPR001638 -
Tsu04g00627 896 PIRSF IGluLR_plant 351 879 IPR017103 -
Tsu04g00627 896 PIRSF IGluLR_plant 3 366 IPR017103 -
Tsu04g00627 896 Pfam Ligand-gated ion channel 766 804 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00627 Tsu-Chr4 5836014 5841801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00627 33 840 Ion Channels AT2G29100 30.823 4.80e-111 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00627 - - mtr:MTR_5g059920 1279.23