Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00619 ATGTCATATTTTTATCTTAATCTTattgttctttctttgtttctctTCATTCATAGTACTCATGAGTTACAATTTGCTCAAACACAAGTTCTGTTACAGTTAAGAAAGTATCTTGAATACCCTACATCTCtgcaaatttttgaaaattacaatTTAGACCTTTGTACCATTCCTTCATCTCAACATTTTAGCATTAAATGTGAGGGTAATTCAGTAACTGAGCTCAAAATCATAGGAGACAATCATAAACATGCAAAGGTAACCAAATTCAATGGTTTTGCAGTTCCAAATCAAACACTATCCAAAACTTTCTCTATTGATTCTTTTGTCACAACATTAACAAGGTTAACAAATTTAAAGGTACTTAGTTTGGTTTCTTTAGGTATATGGGGTCCACTTCCTGATAAGATTCATAGATTATCTTTTCTTGAAGTTTTGGATTTGAGTTCAAATTTCTTATTTGGTTCTATTCCACCAAAGATAGGTGCATTGGTTAATCTTCAAATATTAACATttgatgaaaattattttaatgcAACAATGCCTAATGTTTTTGAACCTTTGTTTAATTTAACTATCTTGAGTTTGAAAAATAATCACTTAAAAGGTTCATTTCCTTTTTCATTAtgcaaaagtaaatctcttactgatatttcattttcaaataatgAATTATCTGGTGCATTGCCGAATCTCGTTGCGCTTTCGAGGTTACGTGTGTTGGATTTAAGAGATAATAGTTTTGATTCCGAGTTACCTTTGATGCCGAAATCGGTAGTCACAGTATTACTAAGTAAAAACTCGTTCACCGGCGAGATTCCTAGTGAGTTTGGTGAATTGAATCAGCTTCAACATCTTGATCTTTCGTATAATCGTCTTAGCGGGGTGTGTCCGTCTTCGTTGTTTTCTTTGACAAACATTAGTTACTTGAATTTAGCAAATAATGATCTAAGTGGTTCAATTCCAAAGAAACTAGAATGTGGAAGTAAACTTGGATTTGTGGATATTTCTAGTAACATGTTAAGTGGTTTTGTTCCTTCTTGCTTGGAAAGTACTTCTGATAAAAGAGTTGTTAGATTTGGTGGAAATTGTTTATCTGATAATTCTCAACCTCAGAATCAGAAGAATAGTTCTTATTGTGAAGAATCAAGTTCAAGAAAGATGAAATTTTGGAGATGGGAACTTGATGTTGCAATTGCTATCATTGttgtggttttgattttgattttagcTTTTGGAGTTTACTTTTACAGAAAGTTTCATTCAAGAGAGATATATAGACATGAGATGTTGCCAAAGATTGTTCAAGATAATTCAACAACAGGAGTTTCTTCTGAACTTCTTGCTAGTGCAAgaTATATTTCTCAAACAATGAAGCTAGGGACACACGCTACTCCAAGTAGTAGACCCTTTTccattgaagaattgaaagaaatcACAAGAAACTTTGATTTGTCAACTTATATTTGTCAAGGATCCATAGGAAAGCTATACAAAGGTAAACTAGAGAATGGTTCCTATGTGATGATAAGATCATTGGCTATGAGAAAGAAATTCTCAATACAAAATCTCAAAGCTAGGTTGGATTTACTGTCGAAGCTTCACCATCCAAATTTGGTTAGTCTCTTAGGTCACTGTATCGATGGTAGTGGAAAAGATGGTGCTAGTATCCACAAGCTACATCTTGTGTACGAGTATGTGCAAAATGGCGATTATCGTACACATTTGTCAGAATTTTCACCGGATAAGGCACTAAAATGGTCTGATAGATTGGCAATATTAATTGGAGTTGCCAAGGCTGTACATTTTTTACATACTGGAATTATACCAGgttgttttaaaaaccaattaaaGACGAACAATGTTTTACTTCATGAACACCGCTTTCCCAAACTAAGCGACTATGGTATGTCCTTGATCGCTGAAGAGATCGAAAACATTGAGGTAAAGGGAGTGATTCCAAAATCTTGCCAAAGGGAAGAATTAGAGGATGATGTTTACAATTTTGGTTTCATATTGTTTGAATCACTTGCTGGACCCATAGCAAGTGAGAAAGGAGAAGCATTCTTTCTTAATGAAAGGGCATCGTTTGATAGTCATGATGGTAGAAAAAGAATAGTTGATCCAGTAGTGTTGACAAGTTGCTGTCAAGAGTCTTTATCAATTGTAATATCTATCACAACCAAATGTATATCTCCACAATCATCATCTCGTCCTTCTTTCGAAGATGTTCTCTGGAATTTACAATATGCAGCTCAAGTTCAAGCCACAGCTGATGCAGATTCTATATCCTAG 2295 0.3207 MSYFYLNLIVLSLFLFIHSTHELQFAQTQVLLQLRKYLEYPTSLQIFENYNLDLCTIPSSQHFSIKCEGNSVTELKIIGDNHKHAKVTKFNGFAVPNQTLSKTFSIDSFVTTLTRLTNLKVLSLVSLGIWGPLPDKIHRLSFLEVLDLSSNFLFGSIPPKIGALVNLQILTFDENYFNATMPNVFEPLFNLTILSLKNNHLKGSFPFSLCKSKSLTDISFSNNELSGALPNLVALSRLRVLDLRDNSFDSELPLMPKSVVTVLLSKNSFTGEIPSEFGELNQLQHLDLSYNRLSGVCPSSLFSLTNISYLNLANNDLSGSIPKKLECGSKLGFVDISSNMLSGFVPSCLESTSDKRVVRFGGNCLSDNSQPQNQKNSSYCEESSSRKMKFWRWELDVAIAIIVVVLILILAFGVYFYRKFHSREIYRHEMLPKIVQDNSTTGVSSELLASARYISQTMKLGTHATPSSRPFSIEELKEITRNFDLSTYICQGSIGKLYKGKLENGSYVMIRSLAMRKKFSIQNLKARLDLLSKLHHPNLVSLLGHCIDGSGKDGASIHKLHLVYEYVQNGDYRTHLSEFSPDKALKWSDRLAILIGVAKAVHFLHTGIIPGCFKNQLKTNNVLLHEHRFPKLSDYGMSLIAEEIENIEVKGVIPKSCQREELEDDVYNFGFILFESLAGPIASEKGEAFFLNERASFDSHDGRKRIVDPVVLTSCCQESLSIVISITTKCISPQSSSRPSFEDVLWNLQYAAQVQATADADSIS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00619 764 PRINTS Leucine-rich repeat signature 283 296 - -
Tsu04g00619 764 PRINTS Leucine-rich repeat signature 304 317 - -
Tsu04g00619 764 Gene3D Ribonuclease Inhibitor 25 258 IPR032675 -
Tsu04g00619 764 Gene3D Transferase(Phosphotransferase) domain 1 567 762 - -
Tsu04g00619 764 PANTHER OS07G0166700 PROTEIN 5 762 IPR045272 GO:0004714|GO:0006468
Tsu04g00619 764 SUPERFAMILY L domain-like 94 366 - -
Tsu04g00619 764 SMART LRR_typ_2 140 164 IPR003591 -
Tsu04g00619 764 SMART LRR_typ_2 188 212 IPR003591 -
Tsu04g00619 764 SMART LRR_typ_2 280 303 IPR003591 -
Tsu04g00619 764 SMART LRR_typ_2 304 328 IPR003591 -
Tsu04g00619 764 SMART LRR_typ_2 235 258 IPR003591 -
Tsu04g00619 764 ProSiteProfiles Leucine-rich repeat profile. 282 303 IPR001611 GO:0005515
Tsu04g00619 764 Pfam Protein tyrosine and serine/threonine kinase 486 746 IPR001245 GO:0004672|GO:0006468
Tsu04g00619 764 Gene3D Phosphorylase Kinase; domain 1 444 566 - -
Tsu04g00619 764 Gene3D Ribonuclease Inhibitor 259 389 IPR032675 -
Tsu04g00619 764 ProSiteProfiles Protein kinase domain profile. 483 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00619 764 SUPERFAMILY Protein kinase-like (PK-like) 463 748 IPR011009 -
Tsu04g00619 764 Pfam Leucine rich repeat 260 317 IPR001611 GO:0005515
Tsu04g00619 764 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 5 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00619 Tsu-Chr4 5746075 5750386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00619 6 693 Miscellaneous Gene Families AT5G14210 55.029 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Tsu04g00619 PK_Tyr_Ser-Thr 1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00619 - - gmx:100813412 1130.93