Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00614 ATGACCTCTCCTCTTCCGCCTCCTTGTGATTCGGATATTACTTTCCTCCCCGTTCGAGgTGAAAAATTGTTAACTTGTGAGACAACATCACCACATGATTCTATCTACCATTGCAATGAAAATGAATCACAAAATCATCATTGTGAAACATTTGCACTCTTTTTCACAAACTCTCATTATTCTTCTCTCTCAAACCTTACCTTATACTTAGGACTCAACAAGTTTATCATAGCAGAAATCAATGGTTTCTCTGCAGAAACTGAGTTTCTTCCACAGAATCATCCTCTTCTTATACCTATAGATTGCAAATGCAAAAATGGTTTTTTTCAAGCTGAGTTAACAAAAACTACTATCAAAGGAGAAAGTTTCTATGACATTTCTCAATCACTTGAAGGCTTAACAACTTGTAAAGCTATCAAAGATAACAACATTGGTATCTCACCTTGGAACCTTGATTCTAAACTCAAATTGATTATTCCTTTGAAATGTGCTTgccctttttcttcttttgttataccaaaaccaaaatttcttctttcttATCCTATAGTTGAAAATGATACAATTTCAAATTTGGCCTTAAAGTTCAATATTTCAAAGGAAGCTATTGTTACTGCTAATAGCtttccatcatcatcatcagaagaaATTCTTGGAACAAGAAGCTTAGGACCATTTACCTCTATTCTAATTCCATTGAATGAGaaaccttttctttttcttgatccTTTAGCTAAACCAAAACAACCCAATTCAGATTTTCCAAGAACAAACAATATTTCAATAAATAGTCCacacaagaaaaaaacaatgaGAAAGAGTGAAATTTATATTGGCCTAATTGGTGTTGCAATTGGTGTTTTCTTTGCTTTAGTGGTAGGTTTTTTCTTTATGTGGTTGAAGCAAAAGAAGGTGGAAGAAAATTCATGCAAAGAAAGAGATTTGGAGCTACAACATCTAAATCAAAGTATGAGAACTACAAGTGATAAGAAAGTTTCATTTGAAGGGTCACAAGATACACTTGATAGTAAAATCATCGATGCAACACCGCGTAAGATGTTGCTTGAGACATACACAATTGAAGATTTGAGAAAAGCAACTGAGGATTTCAGTTCAAATTGTCACATTGATGGATCAGTTTTTCATGGTTGTTTAAATGGGAAGAATTTGGCaatcaaaagaataaaaaccgAAATGGTGTCGAAATTAGATCTTGGTCTTTTTCATGAtgcaaatcatcatcatccaaaCATAATTAACCTTCTTGGAACAAGTATTTCAGAAGGGTTGTCAGATTCAGAATCCTTTTTGGTTTTTGAGTATGCGAAAAACGGTTCATTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAATCAATTCATAGCTTCTTGCTACTGTTTCTTGAATTGGGATCAAAGGCTTAGAATTTGTCTTGATGTGGCTAGTGCTTTGGATTACATGCACAATGTTATGAATCCAAGTTATGTGCATAGAAATGTGAAGAGTAGGAACATCTTTTTAGATGAAGAATTTGGTGCTAAGATAGGTAATTTTGGTATGGCAAGTTTTGTTGAAAATGAAACTGAGGATTCTCAATTTTATTCAACAAATTATGCTTCTTGGAGTATTGGTTATTTGGCACCTGAATATATTCATCAAGGTATAGTTTCAACAAGCATTGATATATTTGCTTATGGTGTTATTTTGTTAGAAATTTTATCTGGTCAAACACCTATAAGTGGATCAAGTGATAGAGGTGAAGGAAGTGTTTGGCTTagtgataaaataaaaactactttgATGTCAGAAAATAATGTGAATGAATTGCTAAGGGAATGGATTGATAGTGCATTAGGTGATAATTACTCATTTGATGCAGCTTTGGAAGTGGCTAATATTGCAAGAGCTTGTGTTGAGGAAGATTGTTCTTTGAGGCCTAATGCAAGAGAGATTGTTGAGAAGATGGCAAGATTGGTGGAAGAATTACCAAATGAAGAACATCAAATTTTGATGAGTGAAAGCTCTTGCAAACCTCTTGTGGAGGGACTAGGAagcaatatgtga 2067 0.3135 MTSPLPPPCDSDITFLPVRGEKLLTCETTSPHDSIYHCNENESQNHHCETFALFFTNSHYSSLSNLTLYLGLNKFIIAEINGFSAETEFLPQNHPLLIPIDCKCKNGFFQAELTKTTIKGESFYDISQSLEGLTTCKAIKDNNIGISPWNLDSKLKLIIPLKCACPFSSFVIPKPKFLLSYPIVENDTISNLALKFNISKEAIVTANSFPSSSSEEILGTRSLGPFTSILIPLNEKPFLFLDPLAKPKQPNSDFPRTNNISINSPHKKKTMRKSEIYIGLIGVAIGVFFALVVGFFFMWLKQKKVEENSCKERDLELQHLNQSMRTTSDKKVSFEGSQDTLDSKIIDATPRKMLLETYTIEDLRKATEDFSSNCHIDGSVFHGCLNGKNLAIKRIKTEMVSKLDLGLFHDANHHHPNIINLLGTSISEGLSDSESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLNWDQRLRICLDVASALDYMHNVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMASFVENETEDSQFYSTNYASWSIGYLAPEYIHQGIVSTSIDIFAYGVILLEILSGQTPISGSSDRGEGSVWLSDKIKTTLMSENNVNELLREWIDSALGDNYSFDAALEVANIARACVEEDCSLRPNAREIVEKMARLVEELPNEEHQILMSESSCKPLVEGLGSNM 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00614 688 Gene3D Transferase(Phosphotransferase) domain 1 442 677 - -
Tsu04g00614 688 Pfam LysM domain 183 212 IPR018392 -
Tsu04g00614 688 PANTHER PROTEIN LYK2 18 682 - -
Tsu04g00614 688 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 18 682 - -
Tsu04g00614 688 ProSiteProfiles Protein kinase domain profile. 343 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00614 688 Gene3D Phosphorylase Kinase; domain 1 344 441 - -
Tsu04g00614 688 SUPERFAMILY Protein kinase-like (PK-like) 353 654 IPR011009 -
Tsu04g00614 688 Pfam Protein kinase domain 378 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00614 Tsu-Chr4 5713478 5718417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00614 36 682 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 39.822 6.26e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Tsu04g00614 Pkinase 2.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00614 - - gmx:100816082 964.14