Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00607 ATGCTGGAAGAAACAACTTCGATTGATTACGCCATGGAAGCAGCATCTGGTCCTCACTTTTCCGGCCTTCGACTCGACGCCCGACTTTCATCTTCCCCAACCTCTTCTCTCGCTCCCAATTCAACCCTAACTTCCGATTCTCTTCTCAATCAACCCTTCGTCATTGGTGTTTCCGGTGGAACTGCTTCTGGAAAAACCACCGTTTGTGATATGATCATTCAACAGCTTCACGATCATCGTGTAGTTCTTGTTAATCAGGATTCGTTTTATCGCGGGTTGAAACCGGAAGAATTGGAACATGTTCACGAGTACAATTTTGATCACCCTGatgCTTTTGACACCGAGCAACTGTTAGAGTGTATGAAGAAGCTCATCAGTGGCCACAGAGTCAAAATTCCCATTTACGACTTTAAGAAGCACCAACGCTCTTCTGATAGTTTCCGTCAGGTCAATGCCTCTGACGTCATTATATTGGAGGGAATTCTTGTATTCCACGATCAAGGTGTCCGTGATCTGATGAACATGAAGATCTTTGTTGACACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGACACAGTAGAAAGGGGCAGAGACATAAACTCTGTTCTCGAAATGTATGCAAAGTTTGTTAAGCCTGCTTTTGACGACTTTGTTCTACCATCAAAGAAATATGCTGATGTGATCATTCCTCGTGGAGGTGATAATCACGTTGCCATTGATTTGATTACACAACACATCCGCACAAAGCTTGGTCAACATGATCTATGCAAAATATATCCAAACGTGTATGTTATTCAATCTACATTCCAGATAAGGGGGATGCATACATTGATTCGTGACAAAGATATATCAAAGcatgattttgtattttattcagATCGACTTATACGACTGGTTGTTGAGCATGGTCTTGGTCATCTGCCTTTCACCGAAAAGCAAGTTGTCACTCCAACAGGATCTGTCTATACTGGTGTTGATTTCTGCAAGAAATTATGCGGTGTTTCAATTATTCGAAGTGGAGAGAGCATGGAAAATGCACTTCGTGCATGTTGTAAAGGcattaaaattggaaaaattcTGATTCACCGGGATGGAGACAATGGAAAACAGCTTATATATGAAAAGCTTCCTAAGGATATCTCAGAAAGGCATGTCTTGCTTCTGGACCCTGTCCTTGCTACAGGTAACTCAGCTAACCAAGCAATTGAATTACTCATTCAGAAAGGAGTACCAGAATCCCACATTATATTCCTGAATCTCATTTCTGCTCCTGAAGGAATCCATTGTGTTTGTAAAAGGTTCCCAGCATTGAAAATTGTCACATCTGAGATTGATGTTGCATTAAATGAAGAGTTTCGTGTTATCCCTGGATTGGGTGAATTTGGTGATCGCTATTTTGGCACTGATGATTGA 1422 0.4072 MLEETTSIDYAMEAASGPHFSGLRLDARLSSSPTSSLAPNSTLTSDSLLNQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLKPEELEHVHEYNFDHPDAFDTEQLLECMKKLISGHRVKIPIYDFKKHQRSSDSFRQVNASDVIILEGILVFHDQGVRDLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEMYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAIDLITQHIRTKLGQHDLCKIYPNVYVIQSTFQIRGMHTLIRDKDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHRDGDNGKQLIYEKLPKDISERHVLLLDPVLATGNSANQAIELLIQKGVPESHIIFLNLISAPEGIHCVCKRFPALKIVTSEIDVALNEEFRVIPGLGEFGDRYFGTDD 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00607 473 Gene3D - 49 255 IPR027417 -
Tsu04g00607 473 Pfam Uracil phosphoribosyltransferase 270 471 - -
Tsu04g00607 473 PANTHER URIDINE KINASE 34 470 - -
Tsu04g00607 473 Pfam Phosphoribulokinase / Uridine kinase family 54 240 IPR006083 GO:0005524|GO:0016301
Tsu04g00607 473 PRINTS Uridine kinase signature 82 93 - -
Tsu04g00607 473 PRINTS Uridine kinase signature 198 209 - -
Tsu04g00607 473 PRINTS Uridine kinase signature 220 233 - -
Tsu04g00607 473 PRINTS Uridine kinase signature 184 194 - -
Tsu04g00607 473 PRINTS Uridine kinase signature 52 69 - -
Tsu04g00607 473 PRINTS Uridine kinase signature 127 142 - -
Tsu04g00607 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 245 IPR027417 -
Tsu04g00607 473 TIGRFAM udk: uridine kinase 52 252 IPR000764 -
Tsu04g00607 473 Gene3D - 256 471 IPR029057 -
Tsu04g00607 473 SUPERFAMILY PRTase-like 255 472 IPR029057 -
Tsu04g00607 473 CDD UMPK 54 252 IPR000764 -
Tsu04g00607 473 ProSiteProfiles UvrC family, homology region profile. 158 241 IPR001162 GO:0009381
Tsu04g00607 473 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 34 470 IPR029930 GO:0004849|GO:0044206
Tsu04g00607 473 CDD PRTases_typeI 329 444 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00607 Tsu-Chr4 5670450 5677247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00607 1 473 PRT Gene Family AT5G40870 86.128 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00607 K00876 - gmx:100780005 875.93