Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00606 ATGTGGATGCTCTTTGTTCTTATCTTGGGTTTGATGGTGGAGACTCAATCATCCACAATGACACCTTCACTTCAAACAGAAGCAAATGCTATATTGAATAGTGGATGGTGGCACACATCTAATGAACGTTTCAGCATCTCTATTTATTGTAATTGGTCTGATATAAGTTGCAACAAGGATGGAACCATAAAATCAATACACATAGACCCTCAGTATACAGAAGTGGTGTGGGGGAATGACTTTGCAACACTCAACTTGTCTTTTTTCCACAATTTAGAAAGCCTTGTAATCAAGTCAATTGGACTACAAGGTGACATACCTCTATCACTAGGAAAACTTAGAAGATTAAAGCACCTTGACATCTCTTACAACAACATTCATGGTTTCATTCCTCGTGAGTTGGGATTCATAAAAGATCTCATTGCATTAAATCtatcaaacaatgaaattgaagGTGAGATTCCTCTTTCACTAAGAAATCTCACTAAACTCACTCATCTTGATTTGGGTaataatcttattttaggtGAGATACCTTCTTCACTAGGCAACCTTAGACAATTAGAGTACCTAGACATCTCTTTTAACAATATTAATGGTTCGATCCCTCCCGAGTTGGAGTTTCTGAAAAATCTCACTACAATGAGTCTATTTCACAATAGATTCAAAGGTGACATACCATCTTCACTAGGAAAACTCAACCAATTAGAGTACCTAGACATatcttttaataatattaatggtTTTATCCCTCCCGAGTTGGGGTTCTTGAAAAATCTCATTGCATTAAGTCTATCTAACAATAGATTTCAAGGTGAGATACCTTCTTCACTAGGAAAACTGAATCAATTAGAGTATCTAGATATatcttttaataatattaatggtTTTATCCCTCCTGAGTTGGGGTTCTTGAAAAATCTCACTACATTAAATCTATTTAACAATAGATTCAAAGGTGAGATACCTTCTTCACTAGGAAATCTCAACCAATTAGAGGTGCTAGACATTTCTCACAATAACATTCAAGGAATCATTCCTCCTGAGTTGGGGTTCCTGAAAAATCTCACTAGATTAAATCTATCTAACAATAGACTAAATAGAAACTTGCCCATTTCCCTTTCAAATCTCACACAATTAGATTACCTCGACATCTCTAACAATTACCTCAATGGTTCCCTTCCACCTAACGTCAATCAGTTAACTAAATTGCGAGTGTTGCTGCTAAATAACAACTTCATTAGTGGGACCTTTTCGTTGATCAATCTCTCTCGATTAGAAACTGTTGACATTTCCCACAATTTACTCCAGGGTAAACttccttcaaatatttttccaaCGGAAAATTATGAAGCTTCCATTGACCTCAGTCACAACCTCATTAGTGGTGAAATTCCTTCTCAGCTTGgacatttttttcaatttaatttaagcaataataatcTCACTGGAATGGTTCCCCAATCTCTCTGTAATGTCACTTATGTGAACATTTCCTATAATGATTTGAAGGGTAATATTCCAAATTGTATTGATCCTCACACGATAATAGGGAACAAGGATgtatgttctgacattttataTGATCAAATAAAACTCCATTTTCAACCTTGCAAGAAAAGTAATAAAGCAATTcacaatgttgttgttgttgttgttgttcctATCATTATGATTCTAATATTAGCATTCTCACTTCTCATGTGCTTGAAATTTCGTCATAATTCTATTAAGAACAAGCATGCAAACACAACCACAACAGCAAAAAATGGGGATTTGTTTTGCTTATGGAATTATGATGGAAAAATAGCATATGATGACATTATCAAAGCAACAGAAGACTTTGATATGAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCATGTGGAAAAATTGTTGCCTTAAAAAAACTTCACGGCTACGAAGCAGAGGTTCCTTCTTTCGACGAAAGTTTCagaaatgaagtgagaatattATCAGAAATAAAGCACAAGAACATTGTGAAGCTTTATGGATTTTGCTTGCATAAAAGAATCATGTTTTTGATTTATCAGTACATGGAGAAAGGAAGCTTGTTCTCTATCTTGTATGATGATGTAGAAGCCATGGAATTCAATTGGAGAAAAAGGCTTAACATTGTTAAAGGAGTTGCATTTGCTCTATCTTATCTTCATCATGATTGCAACCCTTCAATAGTGCATAGAGATGTATCGAGTAACAATATCTTGCTAAACTCTGAGTGGCAACCTACTGTTTCTGACTTTGGCACAGCTCGACTCCTTCAACATGATTCATCCAATCGAACAATAGTTGCTGGAACAATCGGATATATCGCTCCTGAGCTTGCTTATACCATGGTTGTGAGTGAAAAGTGTGATATATACAGCTTTGGAGTGGTGGCACTAGAATGTTTAATTGGAAAGCATCCTGAGGAAATATTGTCGTCACTTCAATTAGCATCAACTCAAAGCATGAAATTATGTGAAGTATTAGACCAACGTCTCCCATTTCCAAATAATGCGATGGTTTTACTTGACATAATTCGTGTAGCCGTAATAACATTTGCATGCTTAAATTTCAATCCTAGCTCTCGACCAACGATGAAATGTGTGTCGCAAAGTTTTCTCTCTGAGCTTACACCATTAACCATTCCTTTGAGTGAAATTTCAATGCAGCAACTTATGAGTCAAGAACTCAAAACATTGTTTCATATTGTCAACCCATGA 2748 0.337 MWMLFVLILGLMVETQSSTMTPSLQTEANAILNSGWWHTSNERFSISIYCNWSDISCNKDGTIKSIHIDPQYTEVVWGNDFATLNLSFFHNLESLVIKSIGLQGDIPLSLGKLRRLKHLDISYNNIHGFIPRELGFIKDLIALNLSNNEIEGEIPLSLRNLTKLTHLDLGNNLILGEIPSSLGNLRQLEYLDISFNNINGSIPPELEFLKNLTTMSLFHNRFKGDIPSSLGKLNQLEYLDISFNNINGFIPPELGFLKNLIALSLSNNRFQGEIPSSLGKLNQLEYLDISFNNINGFIPPELGFLKNLTTLNLFNNRFKGEIPSSLGNLNQLEVLDISHNNIQGIIPPELGFLKNLTRLNLSNNRLNRNLPISLSNLTQLDYLDISNNYLNGSLPPNVNQLTKLRVLLLNNNFISGTFSLINLSRLETVDISHNLLQGKLPSNIFPTENYEASIDLSHNLISGEIPSQLGHFFQFNLSNNNLTGMVPQSLCNVTYVNISYNDLKGNIPNCIDPHTIIGNKDVCSDILYDQIKLHFQPCKKSNKAIHNVVVVVVVPIIMILILAFSLLMCLKFRHNSIKNKHANTTTTAKNGDLFCLWNYDGKIAYDDIIKATEDFDMRYCIGTGAYGSVYKAQLPCGKIVALKKLHGYEAEVPSFDESFRNEVRILSEIKHKNIVKLYGFCLHKRIMFLIYQYMEKGSLFSILYDDVEAMEFNWRKRLNIVKGVAFALSYLHHDCNPSIVHRDVSSNNILLNSEWQPTVSDFGTARLLQHDSSNRTIVAGTIGYIAPELAYTMVVSEKCDIYSFGVVALECLIGKHPEEILSSLQLASTQSMKLCEVLDQRLPFPNNAMVLLDIIRVAVITFACLNFNPSSRPTMKCVSQSFLSELTPLTIPLSEISMQQLMSQELKTLFHIVNP 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00606 915 Gene3D Ribonuclease Inhibitor 178 277 IPR032675 -
Tsu04g00606 915 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 126 286 - -
Tsu04g00606 915 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 20 237 - -
Tsu04g00606 915 Pfam Protein kinase domain 621 880 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00606 915 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 126 286 - -
Tsu04g00606 915 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 273 908 - -
Tsu04g00606 915 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 20 237 - -
Tsu04g00606 915 SUPERFAMILY L domain-like 37 319 - -
Tsu04g00606 915 ProSitePatterns Tyrosine protein kinases specific active-site signature. 739 751 IPR008266 GO:0004672|GO:0006468
Tsu04g00606 915 SUPERFAMILY L domain-like 227 505 - -
Tsu04g00606 915 SMART LRR_typ_2 257 281 IPR003591 -
Tsu04g00606 915 SMART LRR_typ_2 113 137 IPR003591 -
Tsu04g00606 915 SMART LRR_typ_2 185 209 IPR003591 -
Tsu04g00606 915 SMART LRR_typ_2 377 401 IPR003591 -
Tsu04g00606 915 SMART LRR_typ_2 233 255 IPR003591 -
Tsu04g00606 915 SMART LRR_typ_2 423 447 IPR003591 -
Tsu04g00606 915 SMART LRR_typ_2 353 376 IPR003591 -
Tsu04g00606 915 SMART LRR_typ_2 305 329 IPR003591 -
Tsu04g00606 915 SMART LRR_typ_2 161 184 IPR003591 -
Tsu04g00606 915 ProSiteProfiles Leucine-rich repeat profile. 355 378 IPR001611 GO:0005515
Tsu04g00606 915 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Tsu04g00606 915 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515
Tsu04g00606 915 Pfam Leucine rich repeat 163 222 IPR001611 GO:0005515
Tsu04g00606 915 SUPERFAMILY Protein kinase-like (PK-like) 600 880 IPR011009 -
Tsu04g00606 915 Gene3D Ribonuclease Inhibitor 282 532 IPR032675 -
Tsu04g00606 915 Gene3D Phosphorylase Kinase; domain 1 574 693 - -
Tsu04g00606 915 ProSiteProfiles Leucine-rich repeat profile. 331 354 IPR001611 GO:0005515
Tsu04g00606 915 Gene3D Ribonuclease Inhibitor 19 177 IPR032675 -
Tsu04g00606 915 Gene3D Transferase(Phosphotransferase) domain 1 694 888 - -
Tsu04g00606 915 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 273 908 - -
Tsu04g00606 915 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 226 316 - -
Tsu04g00606 915 SMART LRR_sd22_2 185 214 - -
Tsu04g00606 915 SMART LRR_sd22_2 401 425 - -
Tsu04g00606 915 SMART LRR_sd22_2 233 248 - -
Tsu04g00606 915 SMART LRR_sd22_2 161 180 - -
Tsu04g00606 915 SMART LRR_sd22_2 281 310 - -
Tsu04g00606 915 SMART LRR_sd22_2 353 379 - -
Tsu04g00606 915 SMART LRR_sd22_2 329 350 - -
Tsu04g00606 915 SMART LRR_sd22_2 113 134 - -
Tsu04g00606 915 ProSiteProfiles Leucine-rich repeat profile. 187 210 IPR001611 GO:0005515
Tsu04g00606 915 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 226 316 - -
Tsu04g00606 915 ProSiteProfiles Protein kinase domain profile. 615 883 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g00606 915 PRINTS Leucine-rich repeat signature 353 366 - -
Tsu04g00606 915 PRINTS Leucine-rich repeat signature 332 345 - -
Tsu04g00606 915 Pfam Leucine Rich Repeat 115 135 IPR001611 GO:0005515
Tsu04g00606 915 Pfam Leucine Rich Repeat 235 257 IPR001611 GO:0005515
Tsu04g00606 915 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00606 Tsu-Chr4 5650043 5653636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00606 87 787 Receptor kinase-like Gene Family AT4G08850 38.727 8.72e-157 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu04g00606 Pkinase 6.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00606 - - mtr:MTR_8g047210 1002.28