Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00603 ATGGGAGAGAGTTCTATGAACCTTGTAGAAAGTGCAACAAGAAACAACAAAATGGAAGAAgttgaaagagaagaagaaatagatCCAGAAAGTATCAATCCACTAAATCAAACACTTCTTAAGAGGCATAGAACACTATCTTCAAGTCCACTTGCACTTGTTGGTGAAAAAGTTTCCTACATAGAAAGCTTAGACTATGAGACCAATGAGAATGATCTATTCAAACATGGTTGGAGAAGTAGATCAAGAGTTGAAGCATTGCAATACATATTCTCGAAATGGTTACTTGCATTTCTTGTTGGATTTCTCACTGGTATTATAGCTACTCTTATAAATCTTGCTATTGAGAACATTGCTGGATATAAGTTTCTGATTGTTCTTAAATACATCAATACAGAAAGGTACTTGACAGGTTTCCTATATTTCACGGgaataaatttcattttaacaTTGGCTGCTTCTATTCTCTGTGTGTGTTTTGCACCCACAGCAGCTGGTCCTGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACACCAAACATGTATGGTGCTACAACATTGATAGTTAAGATATTTGGAAGCATTGGAGCTGTCTCTGCAGGCTTAGATCTTGGGAAAGAAGGGCCTTTGGTACATATAGGAAGCTGCATTGCTTCCTTACTAGGCCAGGGAGGTACTGacaattacaaaatcaaatggCGCTGGCTACGCTATTTCAACAACGATCGTGACCGTCGGGATCTTATTACCTGTGGTGCATCTTCAGGAGTTTGTGCAGCTTTCAGGTCCCCTGTTGGTGGAGTTCTGTTCGCCCTTGAAGAGGTGGCAACCTGGTGGAGAAGTGCTCTTCTATGGAGAACATTTTTTTGCACTGCTGTGGTGGTGGTAGTGCTTAGGGCCTTCATTGAAATCTGCAACTCCGGGAAATGTGGACTTTTCGGTGCAGGCGGATTGATCATGTTTGACGTCAGCAATGTCACTGTTAGTTACAATGTGATGGATATCCTCCCTGTTGCAGCCATTGGGATTATAGGCGGCTTATTGGGAAGCCTTTATAATCATCTTCTACACAAGGTCCTTAGACTCTACAATCTCATCAATCAGAAAGGAAAAATACATAAACTCCTCCTCAGTCTTGCAGTAGTACTGTTTACATCAGTGTGTCAATATGGTCTCCCATACCTAGCAAAATGCACCCCTTGTGATTCATCACTTGCAGACGCAGAATCCGTCTGCCCCAGCAATGGAAGGTCTGGAAATTTCAAACAATTCAATTGCCCACCTGGCCACTACAACGATCTTGCTACTCTTCTGCTTACCACTAATGACGATGCTGTTCGAAACATATTCTCAACAAATACACCTTATGAATATCAACCCTCCTCCCTCATAATTTTCTTTGCACTATATTGCATATTAGGACTAGTTACTTTCGGAATTGCTGTGCCGACTGGACTCTTCCTCCCAATCATCCTTATGGGCTCGGCTTACGGCCGCCTTCTTGGTATGCTCATGGGACCTCATACAAAAATTGACCAAGGATTATTCGCTGTACTTGGTGCAGCCTCCCTCATGGCTGGTTCCATGAGGATGACTGTATCCCTTTGCGTGATTTTCCTTGAACTTACCAGCAATCTTCTCCTACTACCAATAACAATGATTGTTCTCCTAATAGCCAAAACTGTAGGAGATTGCTTCAACCCTAGCATCTATGAGATTATACTGCATTTGAAAGGCCTCCCTTTCATGGACGCAAATCCTGAGTCATGGATGAGAAACCTCACCGTCGGCGAGCTTGTAGATGTAAAGCCGGCAGTGATTTCCCTCCAAGGAGTAGAAAAGGTATCCAAGATAGTAGATGTCTTGAAAAACACTACTCATAATGGTTTCCCGGTGATGGACGATGGAATAGTACCGCCAGTAGGACAGGCCAATGGGGCAACAGAACTGCATGGGCTAATTCTAAGAGCACACCTTATCCAAGCATTAAAGAAGAAGTTCTTCttgaaagagagaagaagaacaGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAACTGGCCGAGCGAGAAGGGAATATTGAAGAGGTGGCTATAACGAGGGAAGAAATGGAGATGTTTGTTGATCTACATCCTCTTACCAATACAACTCCATTTACTGTGCTAGAGAGCATATCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGTCATCTGCTTGTAGTTCCGAAATATCAAGCATCAGGGGTATGCCCTGTAATTGGGATTTTGACCAGACAGGATCTATTAGCCCACAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGAGTAGACAGAAGAGAAATTGA 2379 0.4145 MGESSMNLVESATRNNKMEEVEREEEIDPESINPLNQTLLKRHRTLSSSPLALVGEKVSYIESLDYETNENDLFKHGWRSRSRVEALQYIFSKWLLAFLVGFLTGIIATLINLAIENIAGYKFLIVLKYINTERYLTGFLYFTGINFILTLAASILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLIVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGTDNYKIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFCTAVVVVVLRAFIEICNSGKCGLFGAGGLIMFDVSNVTVSYNVMDILPVAAIGIIGGLLGSLYNHLLHKVLRLYNLINQKGKIHKLLLSLAVVLFTSVCQYGLPYLAKCTPCDSSLADAESVCPSNGRSGNFKQFNCPPGHYNDLATLLLTTNDDAVRNIFSTNTPYEYQPSSLIIFFALYCILGLVTFGIAVPTGLFLPIILMGSAYGRLLGMLMGPHTKIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELTSNLLLLPITMIVLLIAKTVGDCFNPSIYEIILHLKGLPFMDANPESWMRNLTVGELVDVKPAVISLQGVEKVSKIVDVLKNTTHNGFPVMDDGIVPPVGQANGATELHGLILRAHLIQALKKKFFLKERRRTEEWEVREKFTWVELAEREGNIEEVAITREEMEMFVDLHPLTNTTPFTVLESISVAKAMILFRQVGLRHLLVVPKYQASGVCPVIGILTRQDLLAHNILTVFPHLAKSKSRQKRN 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00603 792 SMART cbs_1 722 775 IPR000644 -
Tsu04g00603 792 SMART cbs_1 608 667 IPR000644 -
Tsu04g00603 792 PANTHER CHLORIDE CHANNEL PROTEIN 9 787 - -
Tsu04g00603 792 Gene3D Clc chloride channel 84 587 - -
Tsu04g00603 792 CDD CBS_pair_voltage-gated_CLC_euk_bac 606 773 - -
Tsu04g00603 792 SUPERFAMILY CBS-domain pair 590 772 IPR046342 -
Tsu04g00603 792 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g00603 792 PRINTS Plant CLC chloride channel signature 437 453 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g00603 792 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g00603 792 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g00603 792 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu04g00603 792 Pfam Voltage gated chloride channel 150 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g00603 792 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 9 787 - -
Tsu04g00603 792 PRINTS Chloride channel signature 485 505 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g00603 792 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g00603 792 PRINTS Chloride channel signature 517 533 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g00603 792 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g00603 792 PRINTS Chloride channel signature 535 554 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g00603 792 PRINTS Chloride channel signature 573 587 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g00603 792 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu04g00603 792 CDD ClC_6_like 62 586 - -
Tsu04g00603 792 Pfam CBS domain 721 771 IPR000644 -
Tsu04g00603 792 Gene3D - 588 778 IPR046342 -
Tsu04g00603 792 ProSiteProfiles CBS domain profile. 719 785 IPR000644 -
Tsu04g00603 792 SUPERFAMILY Clc chloride channel 71 588 IPR014743 -
Tsu04g00603 792 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00603 Tsu-Chr4 5625045 5629034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00603 28 786 Ion Channels AT3G27170 79.315 0.0 1232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00603 K05016 - gmx:100788620 1360.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00603 04 5625045 5629034 Tsu03g03012 03 41323057 41328992 PCT