Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00579 ATGGCTTCTTCTTCATTAACTTTTGGTGCTTCTGAGGCAAACTCAAAACATGAGGTTTTTCTCAACTTTCGAGGGGAAGATACTCGATGCAATTTTACAAGCCATCTTTATGCTGCCTTGTGTAGAAAAAATATCGACACATTCATTGATGACGAGGAAATTGAGAGAGGAGATAGTATCTCACGGACGCTTTTTTCAGCTATTGAAAGCTCGAAGATTTGCGTAACAATTTTCTCGCAGGATTATGCTTCTTCTGCATGGTGTTTAGATGAACTTGTGAAGATCATTGAATGCAATGAGAACAAAAAACTTATTGTCATACCTGTTTTCTATCATATCGACCCATCTCATGTAAGACACCAGAGGGGAACTTATGAAGATGCATTTGCCAAACACGAACAGCGTTTCAAGGATAATCTAATTAAGGTACACAAGTGGAGAACTGCTCTGCATCAAGCAGCCAACTCAGCAGGATGGGATTCCTCAAATATTAGGCTGGAGGCTGACCTAGTTGAAAAAATTGTTGAAGATATATTAGATAAGTTGAAACGTATGAGCCCACATGTTCCAAAGAAGGGGCTTGTAGGAATTACTCGACACATGGCACATGTCGAATCATTGTTATGCAATGGATCAGCTGATGTACGGATTATTGGTATTTGGGGTATGGGTGGTATAGGAAAGACAACCATTGCACAGGCTATATATACAAAAGCCTCTTCTCAATACGAGGGATGCTACTTCGCTGCCAATGTGAGGGAAAAATGGAAATATTCTAGAGAAAACGAGTTACGGACTAAACTTCTGGCTGGTGTATTAGGGGACCAAAACTTGGATATTAGCACCCCTACTATAAGTTCCACTTTTGTTGTAGGAAGGCTTCGACGTAAAAAGCTTCTCATTGTTCTCGATGACATAAGTGATTCCAAACAAATAGAATATCTTGTTGGCGAGAAAGATTGGTTTGGACCTGGTAGTCGAATCATAGTGACAACCAGAAATAAAGAAGTGTTTAACAGTGGAGTTGATGAATTATACCAAGTGGGGGTATTGAGTTCTCATGAATCACTGAAGCTTTTTAGCTTGAATGCCTTTCAACAAGACCATCCAATGAGGGAATACCAACACTTGTCAGACAGGGCAGTAGATTATGCTAAGGGCAATCCTCTAGCTCTTAAAATTCTGGGTTCCCGTCTTCGTAACAAACGACCAAAAGAATGGGAGAGTGCACTGGAGAAACTGAAGAAAATTCCCAAAGCTGAAATTTATGATGTGTTAAGATTGAGTTATGAAGGATTAGACCCAGAAGAgcagaatatatttttagatattGCCTGCTGTTTGAAAGGAGAAACAAAATGCAGTATAACAAGAATATTAGAAGGCTGCGGTTATTCTGCCGAAATTGGGATGAGAAGTCTTGAAGATAAGTCTCTTGTAACCATTTCCAAAGGCAACGAGGTACAGATGCATGATCTGATACAAGAGATGGGTTGGCAAATAGTTCGTGAAGAATCTACAAAAGAGCCTGGAAAACGAAGTCGATTGTGGGATCCTAAAGAAATTTATGATGTCCTCAAGTACAACATGGGTACCGACAGTATTGAGAGCATAGCGCTGGACATGTCTCAAATCAAAGAAGTGACATTAAGGCCTGGAACTTTTGACAGAATGTACAAGCTAAGGCTTTTGAATTTCTATGTGCCCTCACATGGTAAGAGAAGAACCAATGTTCAGTTTTCCAGAAGTCTTGAGTGTTTGCCAGATGAATTGAGTTATCTCCGATGGGACTTTTTCCCATTGAGATCCTTGCCACCATCATTTTGTGCAGAGAAGCTTGTTGAACTTGATCTAAAACATAGCCTTGTTGAAAAGCTATGGAATGGAGTGCAGGATCTTGTGAATTTGAAGTTATTGAATCTTGGTGGTTGCAAGCACCTGATTGAGCTCCCAGATTTGTCTTTGGCTTCAAAGCTTGAAGAAGTGCATCTTGATGATTGTACAGGCTTGTTGCATGTTCCTTCATCCATTTTGTCACTTGATAGTCTTTTTGCACTAAATCTGAGAGGCTGTAAAGAGCTTCGTTATATTCAAAGTGAGAAACAGTCTAGATCGCTTAAATGGCTCAATCTTAGAGGATGCTCAAGACTTGTAAAATATTCAGTTATTTCAGATAAATTGGACTATTTGAACTTAGTTGACACGGCAATTGAAGAACTGCCTTCATTAGTTATTGGTTTAGATTGTAGCGTCCAGCTTCTCGACTGCCCAAAACTTGAGAAATTACCTGCAACATTTGATTCCTCATTGTCCATTACTTCGCTCTGTCTAGataattgtttaaatttatcAGAACTCCCTGACAACCTCGGCCTCttatcaaatttaaataaactatCATTAAGAGGAAGTAGTATTGAGAACTTGCCTGGTAGCATAAAATATCTTTCACAGTTAAGAGATCTCAATGTGAGCAACTGTAGGAAGCTCCGTTCCTTGCCCGAGCTTCCATTCTTTTTACAAGACTTGAATGCAAGTAGTTGCATTTCTCTAGAAACAGTATCCAGCTTAGGGATCTCAGTTTTGAAAGATTCATTTGACAAGCTGAAGAAGTTATCATTTCTCAAACAGATTcaggagaaagaaaaaatgtctATTCGTCATCGTGAGTATTTGGGAAGATTTGAGTTCTATAATTGCATGAAATTGAATCAGATCGCGTGCCAGGCTATTATGGAAGAAGCTGTGGTTATAATTCAGCTAGCAGCCAGCCTATCCTCTACGATTGATGATTGTAATGATCCTTACAGTCAAACCGGGGAAATTTCGAATAATTTTGACCCTGAAGATTTTGTATATATTTCCCGTccggtttatattattttaccaGGAAATGAAGTCCCAGATTGGTTCATGCTTAAAAGAATAGACTCCTCTATCATAAAAACTGATATTTTTTCATTGCGGTTTGGTTTTCGCAAATTCCTGGGTTTTGCTTTTTGCCTTGTTGTTGGTCCATCTGACTCAAACAGGAATAAAATTTGTCGTACTGGTTTTGTGGCAGGGTGTAGATACTATTTTAAGGGAGATTATGCTGGAACTTGCATTACAAAGTCTTCTTCCACTGATGCAAAATCAGATCAGGTATGGCTGTGGTATGACCAGATTTTAGATGTTGTAGAAGTAAGGAGCAGCTTACCTTCAGATGAGGTctcctttgatttttttatccgGCCTAGTAGTTCAGGACTTGTTGTGAAACAGTGCGGAGTTCGACCATTGTATGCTCCGTTATACATTATGCAAAGCTCAAACGAAGAAGAAGCTACCGGTGAAGGTAAGAGAGCATATCATGAGTTTGAAAACAACAAAACTCCAACCAGTTATACCCTTATTCACCAATATGCTCGTCCTCGTGACAAGGGCCTTGAATTGTCATTAAAAGAAAGGATTTCAGGGTATCACACAGGACATTTTGGGAAATCCATCCCATCAATTTCTTGTGCCACAAATGTTGTTGATCTTCAAATGCAACACAACCGCTATGGTAATTGTGCCGAAGTAATTGTTGGTTTTGGCCTTGTTGGTAGAAGTCCCCCCCAGCCACTGCATGATCTGCAGTATTTAGCACGACAAGTTCAGGATTACTATTGTTATTTTGATGAACTTGTAGACAATATCAACGTCTTTTCATCGCTAATGAGATTGTTTCTATATGATTGCAATATTGAAAGCTTGGCTGCTAGCATCAAGCATCTTTCAAGTCTGGAAGAGCTTTCATTGATGTACTGCAAGAGGCTTATGTCTCTCCCCAATCTTCCACCATCCCTTAGGAGATTGTCTGTCGTTGAGTGCACGTCTCTGGAGACAGTTGAATTTGCTGAGGAAAACTCCATGATATTTTTTGGAGTATCCAATGTAATGGGTATTTATGACAAAGTATCGAGAATACAAGTTACTGACCCAGGAGCAAGTGTCACAGACTGGCACATGAAAATGTCAAGGTCACGACATTCAATTATGATAATTGTGTTCAATGTTGATTCAAGTTCAACCAAGTCACTGAATTCCATGTGCGTAGGTGATACGGTAAAAGTTACCATCACGTGA 4110 0.3864 MASSSLTFGASEANSKHEVFLNFRGEDTRCNFTSHLYAALCRKNIDTFIDDEEIERGDSISRTLFSAIESSKICVTIFSQDYASSAWCLDELVKIIECNENKKLIVIPVFYHIDPSHVRHQRGTYEDAFAKHEQRFKDNLIKVHKWRTALHQAANSAGWDSSNIRLEADLVEKIVEDILDKLKRMSPHVPKKGLVGITRHMAHVESLLCNGSADVRIIGIWGMGGIGKTTIAQAIYTKASSQYEGCYFAANVREKWKYSRENELRTKLLAGVLGDQNLDISTPTISSTFVVGRLRRKKLLIVLDDISDSKQIEYLVGEKDWFGPGSRIIVTTRNKEVFNSGVDELYQVGVLSSHESLKLFSLNAFQQDHPMREYQHLSDRAVDYAKGNPLALKILGSRLRNKRPKEWESALEKLKKIPKAEIYDVLRLSYEGLDPEEQNIFLDIACCLKGETKCSITRILEGCGYSAEIGMRSLEDKSLVTISKGNEVQMHDLIQEMGWQIVREESTKEPGKRSRLWDPKEIYDVLKYNMGTDSIESIALDMSQIKEVTLRPGTFDRMYKLRLLNFYVPSHGKRRTNVQFSRSLECLPDELSYLRWDFFPLRSLPPSFCAEKLVELDLKHSLVEKLWNGVQDLVNLKLLNLGGCKHLIELPDLSLASKLEEVHLDDCTGLLHVPSSILSLDSLFALNLRGCKELRYIQSEKQSRSLKWLNLRGCSRLVKYSVISDKLDYLNLVDTAIEELPSLVIGLDCSVQLLDCPKLEKLPATFDSSLSITSLCLDNCLNLSELPDNLGLLSNLNKLSLRGSSIENLPGSIKYLSQLRDLNVSNCRKLRSLPELPFFLQDLNASSCISLETVSSLGISVLKDSFDKLKKLSFLKQIQEKEKMSIRHREYLGRFEFYNCMKLNQIACQAIMEEAVVIIQLAASLSSTIDDCNDPYSQTGEISNNFDPEDFVYISRPVYIILPGNEVPDWFMLKRIDSSIIKTDIFSLRFGFRKFLGFAFCLVVGPSDSNRNKICRTGFVAGCRYYFKGDYAGTCITKSSSTDAKSDQVWLWYDQILDVVEVRSSLPSDEVSFDFFIRPSSSGLVVKQCGVRPLYAPLYIMQSSNEEEATGEGKRAYHEFENNKTPTSYTLIHQYARPRDKGLELSLKERISGYHTGHFGKSIPSISCATNVVDLQMQHNRYGNCAEVIVGFGLVGRSPPQPLHDLQYLARQVQDYYCYFDELVDNINVFSSLMRLFLYDCNIESLAASIKHLSSLEELSLMYCKRLMSLPNLPPSLRRLSVVECTSLETVEFAEENSMIFFGVSNVMGIYDKVSRIQVTDPGASVTDWHMKMSRSRHSIMIIVFNVDSSSTKSLNSMCVGDTVKVTIT 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00579 1369 Gene3D Ribonuclease Inhibitor 1150 1299 IPR032675 -
Tsu04g00579 1369 Gene3D Ribonuclease Inhibitor 526 720 IPR032675 -
Tsu04g00579 1369 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 159 IPR035897 -
Tsu04g00579 1369 Gene3D - 350 434 IPR042197 -
Tsu04g00579 1369 PRINTS Disease resistance protein signature 217 232 - -
Tsu04g00579 1369 PRINTS Disease resistance protein signature 631 647 - -
Tsu04g00579 1369 PRINTS Disease resistance protein signature 293 307 - -
Tsu04g00579 1369 PRINTS Disease resistance protein signature 385 399 - -
Tsu04g00579 1369 ProSiteProfiles TIR domain profile. 15 182 IPR000157 GO:0007165
Tsu04g00579 1369 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 756 925 - -
Tsu04g00579 1369 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 760 - -
Tsu04g00579 1369 Pfam TIR domain 16 195 IPR000157 GO:0007165
Tsu04g00579 1369 Gene3D - 184 343 IPR027417 -
Tsu04g00579 1369 Gene3D Ribonuclease Inhibitor 721 934 IPR032675 -
Tsu04g00579 1369 Gene3D - 11 183 IPR035897 -
Tsu04g00579 1369 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 756 925 IPR044974 GO:0006952
Tsu04g00579 1369 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 760 IPR044974 GO:0006952
Tsu04g00579 1369 Pfam NB-ARC domain 200 416 IPR002182 GO:0043531
Tsu04g00579 1369 Pfam C-JID domain 962 1096 IPR045344 -
Tsu04g00579 1369 SUPERFAMILY L domain-like 489 888 - -
Tsu04g00579 1369 SMART till_3 16 156 IPR000157 GO:0007165
Tsu04g00579 1369 SUPERFAMILY L domain-like 1216 1292 - -
Tsu04g00579 1369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00579 Tsu-Chr4 5357191 5364425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00579 24 829 WRKY Transcription Factor Family AT4G12020 34.517 2.02e-121 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00579 - - mtr:MTR_1g052170 1460.66