Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00578 ATGTGCAACACTGATCGTGATCCAAACGAGGGAAAAGAGAAAGTGAATGAAGAATCAGTAGTCAACTTCAAGACTATGGAGATTCAGAAGAATGAGAACAAGAGAAAGGCGATTGTTCTAGTAGAATCTGATGTTGAAACCAAGAATTCAAAGAGTCCCAACAATGGTGATGCTGCTGAAGAAGAATCCACAAATTCTTCCAAAGAAATGTCtccatttcttctttttggattCATTGTTGATCCAAATAAGAGAATTAAACATGCTTACTCATGCAATTTTTGTAGCCGAAAATTCATTAATCCACAAGCATTAGGTGGCCATCAAAATTGCCACAGAGTTGAGAGAAGACTCAAAGAAAGTGCTGAAGAGCTGCTAAGTCAAAACACCATCACTCCATACCATATGGGGTATGGATATCAATATCGTGGTTATGACAATATGATTCCGTTTGCAACGTCGTCAAATTTTAAGGCTGGTCAAGGCATTGTGAGTCCACAAATTATTGTACCTGAGATTGACTATGGTTCAGTTTCAAATGGGGGCGCCggtggtgatgatgatgttgatcaTGAAGAAAAACAGACTCGGGAGAGAAAGAATCCAAGATTGATATGA 618 0.3625 MCNTDRDPNEGKEKVNEESVVNFKTMEIQKNENKRKAIVLVESDVETKNSKSPNNGDAAEEESTNSSKEMSPFLLFGFIVDPNKRIKHAYSCNFCSRKFINPQALGGHQNCHRVERRLKESAEELLSQNTITPYHMGYGYQYRGYDNMIPFATSSNFKAGQGIVSPQIIVPEIDYGSVSNGGAGGDDDVDHEEKQTRERKNPRLI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00578 205 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Tsu04g00578 205 Gene3D Classic Zinc Finger 79 134 - -
Tsu04g00578 205 PANTHER EXPRESSED PROTEIN 14 167 - -
Tsu04g00578 205 MobiDBLite consensus disorder prediction 41 66 - -
Tsu04g00578 205 MobiDBLite consensus disorder prediction 45 66 - -
Tsu04g00578 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Tsu04g00578 205 PANTHER ZINC FINGER PROTEIN JAGGED 14 167 IPR045320 GO:0003700
Tsu04g00578 205 SUPERFAMILY beta-beta-alpha zinc fingers 88 117 IPR036236 -
Tsu04g00578 205 MobiDBLite consensus disorder prediction 179 205 - -
Tsu04g00578 205 MobiDBLite consensus disorder prediction 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00578 Tsu-Chr4 5347285 5347902 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00578 89 159 C2H2 Transcription Factor Family AT5G57520 41.558 6.35e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00578 - - mtr:MTR_7g028915 203.756