Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00575 ATGTGCAACACTCGCCGTGATCCAAACAATGAGAACAAGCGAAAGGCGATCGCTCTAGTCGAACCTGATGTTGAGACAAAGAATTCAAAAAGTCCCAACAATGGTGATGTTGGTGAAGCAGAATCAACAAATTCATCAAAAGAAATTTCtccatttcttctttttggattCATTGTTGATCCAAATAAGAGAATTAAACATGCTTACTCATGCAATTTTTGTAGCCGAAAATTCATTAATCCACAAGCATTAGGTGGCCATCAAAATTGCCACAGAGTTGAGAAAAGACTCAAAGAAAGTGCTGAAGGCATGAACAAATATTGGATAAATTACTCAAATGGTACTCAAAGGGTGGTAAGTCAAAACACCATCATTCCATACCATGGGAGGTATGGATATCAATATAATGGTTATGAAAATATGATTCAACTTGCAGCATCATCAAATTTTGATGTAGGGAATTTGCTTGGTAAGGTTGAGTATGATTCAGTTTCAAGTGGAGGTGCTGATAGTGATGATGTTGATCATGAAGACAATGTGACTCCAGAGGAGAAAGAATCCAAGATTGATTTTACTCTAAAGCTTTGA 588 0.3571 MCNTRRDPNNENKRKAIALVEPDVETKNSKSPNNGDVGEAESTNSSKEISPFLLFGFIVDPNKRIKHAYSCNFCSRKFINPQALGGHQNCHRVEKRLKESAEGMNKYWINYSNGTQRVVSQNTIIPYHGRYGYQYNGYENMIQLAASSNFDVGNLLGKVEYDSVSSGGADSDDVDHEDNVTPEEKESKIDFTLKL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00575 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Tsu04g00575 195 PANTHER EXPRESSED PROTEIN 6 155 - -
Tsu04g00575 195 SUPERFAMILY beta-beta-alpha zinc fingers 67 97 IPR036236 -
Tsu04g00575 195 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g00575 195 MobiDBLite consensus disorder prediction 164 195 - -
Tsu04g00575 195 MobiDBLite consensus disorder prediction 26 43 - -
Tsu04g00575 195 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Tsu04g00575 195 Gene3D Classic Zinc Finger 54 122 - -
Tsu04g00575 195 MobiDBLite consensus disorder prediction 1 43 - -
Tsu04g00575 195 MobiDBLite consensus disorder prediction 169 195 - -
Tsu04g00575 195 PANTHER ZINC FINGER PROTEIN JAGGED 6 155 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00575 Tsu-Chr4 5334272 5334859 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00575 68 195 C2H2 Transcription Factor Family AT5G57520 26.562 1.96e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00575 - - mtr:MTR_7g028915 213.001