Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00571 ATGTGCAAGCGAAAGGCAATTGTTCTAGTAGAACCTGATGttcaaaaaaagaattcaaagagtcCCAACAATGGTGTTATTGGTGAAGTAGAATCAACAAATTACTCCAAAGAAATTTCtccatttcttctttttggattCATTGTTGAACCTAATAGGAGAATTAGACATGCTTACTCATGCAAATTTTGTAGCCGAAAATTCATTAATCCACAAGCATTAGGTGGTCATCAAAATTGCCACAGATTGGAGAGAAGAATCAAAAATAGGATTGAAGATATGAACAATGCTCAGATAAATTACTCAAATGGTAATCAACGGGTGGTAAGTCAAAACACCATCATTCCATACCATGGAGGGTATGGATATCAATATAATGAATTTATCAATGAGGCTAACCAAGGCATTGTGAGTCAACAAACTACTATGCCTATGATTGACTATGGTTCAATTTCAAATGGAGGCGCTGATAGTGATGAACGAAGTTGA 489 0.3292 MCKRKAIVLVEPDVQKKNSKSPNNGVIGEVESTNYSKEISPFLLFGFIVEPNRRIRHAYSCKFCSRKFINPQALGGHQNCHRLERRIKNRIEDMNNAQINYSNGNQRVVSQNTIIPYHGGYGYQYNEFINEANQGIVSQQTTMPMIDYGSISNGGADSDERS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00571 162 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Tsu04g00571 162 Coils Coil 80 100 - -
Tsu04g00571 162 PANTHER EXPRESSED PROTEIN 2 130 - -
Tsu04g00571 162 Gene3D Classic Zinc Finger 45 113 - -
Tsu04g00571 162 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Tsu04g00571 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Tsu04g00571 162 PANTHER ZINC FINGER PROTEIN JAGGED 2 130 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00571 Tsu-Chr4 5324103 5324591 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00571 59 115 C2H2 Transcription Factor Family AT1G68360 43.333 1.41e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00571 - - mtr:MTR_7g028915 149.443