Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00564 ATGAAGTCTTTTACAGATCTGGGCTTATCTTCTGAATTGGTGAAAGCTTGTGAAACAAATCTGTGTTGGTATGACGCGACGAAGATTCAGAGAGAAGTGATTCCCCTTGCGCTACAAGGAAAAAATGATGTGTTTGCAATTTCCCCATCGTGTACCGGTAAAGTTGGGGCTTTTGTTCTTCCAATATTGCATGCCCTCTTAGAAACCGGACCGAACCTAGACACTTTCTTTGCTTGTGTGCTAACTACTTCAAGGCTCCTTGTTAGTCAAATTAATACTTGCTTTATTATTCTAGGATCTCAATTTGGTGTCAAGAGTGCTATGCTTCATGAATCGTGCAACAAGGAATTTCAAGCCAACCAGATTTCAAAGCAACCTCATATTATTGTTGCGACCACTGAACAACTCTTTAATAACCTAAGAGAAAACCAAGGATTTTCTCTTGCTCTTGGTAGATTAAAATACCTGGTTATAGATGATGCACACCTGGTGTTGAATACTCCCTTTGAGCAAGAACTATTTGAGATTTTAGCAAGGACTCGTAGTGAGCGGTCAACATTTCTTTTTTCACCTACCTTCACAGAGAGGGTGCATACAATCCAAAGTGCGTGTTTAAGGAATCCTGTGAAGATTGACATATCCTCACAATATTCTATTGTGGACACACTGCAGCATCAACGCTACCCTCCGAACGTTGGACGTAAGGTTTGCTACCTTGCATACACTCTCACTGAAAGGACTGGAAGAACATCAGTGGTATTCACTAAGACTTGTGGTACCTCGCTTCGTCTGGCTTTGATTCTTAAGAAGCTTGGTTTCAGAGCCATCCCGGTTATTATTTATATGAGTCAGgcaaAGAAACTTGAATCCTTGAATGCGTTCAAGACCGGGGAGTGCAATATTCTCCTCTGTAGTGAGACATCTTGTAGGGGACTAGATATTCCAGCAGTAGATACGGTGATTAACTACGACATGCCTGTGTATACAAACGATTATATGTACCGTGTGGGGACTACTCATGCTAATGCTGTCATTTCCTTTGTGAAACAATTCAAGACGATAGAGAGACTTATAGGCAGTCAGATACCAGTGTATCCTGCACCATATGAGGATGTTATGCGTTTGAAAAGCTGTGTTAGTGAGGCTGAAAATTTTGCAGAAAAGGAAATGAAAGAATTCGTAGCAGAGCTTGTTAGCGGATTAAAGCTCAAATCTCAGATAAGCAGGTGCATTCAGGTAAGCAGCCTATGGTGTAGCTGTTGCTTCACTGAATCTTCCtga 1281 0.4114 MKSFTDLGLSSELVKACETNLCWYDATKIQREVIPLALQGKNDVFAISPSCTGKVGAFVLPILHALLETGPNLDTFFACVLTTSRLLVSQINTCFIILGSQFGVKSAMLHESCNKEFQANQISKQPHIIVATTEQLFNNLRENQGFSLALGRLKYLVIDDAHLVLNTPFEQELFEILARTRSERSTFLFSPTFTERVHTIQSACLRNPVKIDISSQYSIVDTLQHQRYPPNVGRKVCYLAYTLTERTGRTSVVFTKTCGTSLRLALILKKLGFRAIPVIIYMSQAKKLESLNAFKTGECNILLCSETSCRGLDIPAVDTVINYDMPVYTNDYMYRVGTTHANAVISFVKQFKTIERLIGSQIPVYPAPYEDVMRLKSCVSEAENFAEKEMKEFVAELVSGLKLKSQISRCIQVSSLWCSCCFTESS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00564 426 SMART helicmild6 262 337 IPR001650 -
Tsu04g00564 426 Gene3D - 216 378 IPR027417 -
Tsu04g00564 426 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 235 398 IPR001650 -
Tsu04g00564 426 Gene3D - 1 214 IPR027417 -
Tsu04g00564 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 339 IPR027417 -
Tsu04g00564 426 SMART ultradead3 22 226 IPR014001 -
Tsu04g00564 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 212 IPR027417 -
Tsu04g00564 426 PANTHER BNAC02G41920D PROTEIN 2 393 - -
Tsu04g00564 426 Pfam DEAD/DEAH box helicase 27 198 IPR011545 GO:0003676|GO:0005524
Tsu04g00564 426 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 211 IPR014001 -
Tsu04g00564 426 PANTHER RNA HELICASE 2 393 - -
Tsu04g00564 426 Pfam Helicase conserved C-terminal domain 238 339 IPR001650 -
Tsu04g00564 426 CDD SF2_C_DEAD 234 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00564 Tsu-Chr4 5279821 5284886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00564 43 337 Eukaryotic Initiation Factors Gene Family AT5G11170 25.828 1.03e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00564 K14777 - gmx:100775796 362.459