Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00563 ATGAAGTCTTTTACAGATCTGGGCTTATCTTCTGAATTGGTGAAAGCTTGTGAAAAAAATCTGTGTTGGTATGACCCGACGAAGATTCAAAGAGAAGTGATTCCCCTTGCGCTACAAGGAAAAAATGATGTGTTTGCAATTTCCCCACCGCGTACCGGTAAAGTTGGGGCTTTTGTTCTTCCAATATTGCATGCCCTGTTAGAAACCGGACCGAACCTAGACACTTTCTTTGCTTGTGTGCTAACTACTTCAAGGCTCCTTGTTAGTCAAATTAATACTTGCTTTATTATTCTAGGATCTCAATTTGGTGTCAAGAGTGCTATGCTTCATGAATCGTGCAACAAGGAATTTCAAGCCAACCAGATTTCAAAGCAACCTCATATTATTGTTGCGACCACTAAACAACTCTTTAATAACCTAAGAGAAAACCAAGGATTTTCTCTTGCTCTTGGTAGATTAAAATACCTGGTTATAGATGATGCACACCTGGTGTTGAATACTCCCTTTGAACAAGAACTATTTGAGATTTTAGCAAGGACTCGTAGTGAGCGGTCAACATTTCTTTTTTCACCTACATTCACAGAGAGGGTGCATACAATCCAAAGTGCATGTTTAAGGAATCCAGTGAAGATTGACATATCTTCACAATATTCTATTGTGGACACTCTGCAGCATCAACGCTACCCTCCGAACATGGGACGTAAGGTTTGCTACCTTGCATACACTCTCACTGAAAGGACTGGAAGAACATCAGTGGTATTCACTAATACTTGGGATTCCTCGCTTCGTCTGGCTTTGATTCTTAAGAAGCTTGGTTTCAGAGCCATCCCGGTTACTATTTATATGAGTCAGGCAAAGAAACTTGAATCCTTGAATGCGTTCAAGACCGGGGAGTACAATATTCTCCTCTGTAGTGAGATATCTAGTAGGGGACTAGATATTCCAGCAGTAGATATGGTGATTAACTACGACATGCCTGTGCATACAAACGATTATATGTACCGCGTGGGGACTACTCATGCTAATGCTGTCATTTCCTTTGTGAAGTCATTTGAATTGAAATGA 1065 0.4056 MKSFTDLGLSSELVKACEKNLCWYDPTKIQREVIPLALQGKNDVFAISPPRTGKVGAFVLPILHALLETGPNLDTFFACVLTTSRLLVSQINTCFIILGSQFGVKSAMLHESCNKEFQANQISKQPHIIVATTKQLFNNLRENQGFSLALGRLKYLVIDDAHLVLNTPFEQELFEILARTRSERSTFLFSPTFTERVHTIQSACLRNPVKIDISSQYSIVDTLQHQRYPPNMGRKVCYLAYTLTERTGRTSVVFTNTWDSSLRLALILKKLGFRAIPVTIYMSQAKKLESLNAFKTGEYNILLCSEISSRGLDIPAVDMVINYDMPVHTNDYMYRVGTTHANAVISFVKSFELK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00563 354 Pfam DEAD/DEAH box helicase 27 198 IPR011545 GO:0003676|GO:0005524
Tsu04g00563 354 PANTHER BNAC02G41920D PROTEIN 2 341 - -
Tsu04g00563 354 Pfam Helicase conserved C-terminal domain 238 339 IPR001650 -
Tsu04g00563 354 PANTHER RNA HELICASE 2 341 - -
Tsu04g00563 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 339 IPR027417 -
Tsu04g00563 354 SMART helicmild6 262 337 IPR001650 -
Tsu04g00563 354 Gene3D - 1 214 IPR027417 -
Tsu04g00563 354 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 235 354 IPR001650 -
Tsu04g00563 354 SMART ultradead3 22 226 IPR014001 -
Tsu04g00563 354 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 2 31 IPR014014 GO:0003724
Tsu04g00563 354 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 211 IPR014001 -
Tsu04g00563 354 Gene3D - 216 354 IPR027417 -
Tsu04g00563 354 CDD SF2_C_DEAD 225 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00563 Tsu-Chr4 5270626 5275230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00563 43 337 Eukaryotic Initiation Factors Gene Family AT5G11170 25.497 1.52e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00563 K14777 - gmx:100775796 340.887