Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00559 atgGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGATTGGAAGAGTTGAAAAATGAAGGAGATTCTGTTGATTTGAGGCTTGGTGAAGGTTCTGATTCAATGGAAAAATCAGTTCAAGATATAGGAGTGGAAGATTCGAAAGGTGTGTCGTCGTTTTCAGGATCATCGAAAAGGTTGCGTTCGCAAAATGGATCGCAGAATATGATTTGCTCGGTTGATGGATGTGATGCTGATCTTAGTGATTGTAGAGAGTATCATAAGCGTCATAGGGTATGCGAAAAGCACTCGAAGACGCCGGTTGTTTTAGTTGGAGGTAAGCAGCAAAGGTTCTGCCAACAATGTAGCAGGTTTCATTCGCTTGCGGAGTTTGATGAGGTTAAGAGGAGTTGCCGGAAGCGTCTTGATGGACATAATAAGCGAAGGAGGAAACCTCAGCCACCTTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCACTTTGGTAGCCCTCAGGCATATGTGAATGTGAATCCTATTGTGAGAAACATTTGGCCTGCCACTTCCATAACTGATGCTGAATCCGGTTACGATCATCACCGACTTTTGTATCGAATCGACAAACATAAACAGGATAAAGGACAACCTCATTGGCAAGAAATTCTCCCTAAATCTGGCGATGTTAACAAAGCTGCGTCCGGAATTCCTATCGACCAACCTATTCGCGGTTCTGTTGATTCATCAGCAGGTGGAAAAGGCGGTAGGAAGGTCTCTTCTGATAGCAAGCCTGGATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGTTCAGAGTTGAGTTTGATGCAATCAAGCATCAACAACAGTCCAACAGAATCTTCGTCTGGAACAATGCATTTCGATGCGATGGATGAGTACTCCTTCTCAGGAAAGGCGAAAGATAAGCCTAATAATGGTTCAGTTTTTGTTCTAGATGGAAACACAACAAACCTTCATTGCAATGGGATGCTGCAAATGGGGCCTAATAGTTTGGTCGAAAATGAAAACTCGCTGACACTTCCATTTTTCTGGGAGTAA 1101 0.4305 MDWDWKEFAWDPSGLEELKNEGDSVDLRLGEGSDSMEKSVQDIGVEDSKGVSSFSGSSKRLRSQNGSQNMICSVDGCDADLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLAEFDEVKRSCRKRLDGHNKRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPQAYVNVNPIVRNIWPATSITDAESGYDHHRLLYRIDKHKQDKGQPHWQEILPKSGDVNKAASGIPIDQPIRGSVDSSAGGKGGRKVSSDSKPGSFDSGCALYLLSTLQTQSSELSLMQSSINNSPTESSSGTMHFDAMDEYSFSGKAKDKPNNGSVFVLDGNTTNLHCNGMLQMGPNSLVENENSLTLPFFWE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00559 366 SUPERFAMILY SBT domain 70 151 IPR036893 GO:0003677|GO:0005634
Tsu04g00559 366 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 9 366 - -
Tsu04g00559 366 Pfam SBP domain 72 145 IPR004333 GO:0003677
Tsu04g00559 366 MobiDBLite consensus disorder prediction 234 265 - -
Tsu04g00559 366 ProSiteProfiles Zinc finger SBP-type profile. 69 146 IPR004333 GO:0003677
Tsu04g00559 366 MobiDBLite consensus disorder prediction 21 42 - -
Tsu04g00559 366 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 366 IPR044817 GO:0003677
Tsu04g00559 366 Gene3D - 62 133 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00559 Tsu-Chr4 5226398 5230592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00559 68 195 SBP-box Gene Family AT5G50670 54.688 4.60e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu04g00559 SBP 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00559 - - lja:Lj1g3v3847150.1 517.694