Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00558 ATGGAGAACAATTATTCCATGTTATTTCCTTGTCCTCCTTCTTCTAGCTACCAAATTCCATCAACTAGTTTGAATGGTCAAAGTTCAAATGCATTTCTTGGTTTGAAGACTAATAATAATGATCAAATTATTAGCGTTAATCATGGTGATGATCATGAAGATGAAAAAAGAGGTGAAGGAAGTGTTAATGTTGTTAATGATCATGATCAACAAGGTGTTGTTAAAaagaaaggagagaaaaaaGCTAAGAAGCCTAAATATGCTTTTCAAACTAGAAGTCAAGTTGATATACTTGATGATGGTTATAGATGGAGAAAATATGGACAAAAAGCtgttaaaaacaacaaatttcccagAAGCTACTATAGGTGCACACATCAAGGATGCAATGTAAAGAAACAAGTTCAACGTTTAACCAAAGATGAGGGAGTAGTTGTGACAACTTATGAAGGAGTCCATACTCACCCTATTGAGAAGACAACCGATAACTTTGAGCATATTTTGAGTCAGATGCAAATATACACTCCCTTTTGA 534 0.3165 MENNYSMLFPCPPSSSYQIPSTSLNGQSSNAFLGLKTNNNDQIISVNHGDDHEDEKRGEGSVNVVNDHDQQGVVKKKGEKKAKKPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILSQMQIYTPF 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00558 177 ProSiteProfiles WRKY domain profile. 93 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00558 177 MobiDBLite consensus disorder prediction 46 62 - -
Tsu04g00558 177 Pfam WRKY DNA -binding domain 99 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g00558 177 SUPERFAMILY WRKY DNA-binding domain 90 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g00558 177 MobiDBLite consensus disorder prediction 43 62 - -
Tsu04g00558 177 Gene3D WRKY domain 82 157 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g00558 177 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 24 173 IPR044810 GO:0003700
Tsu04g00558 177 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 24 173 - -
Tsu04g00558 177 SMART WRKY_cls 98 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00558 Tsu-Chr4 5207871 5211994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00558 25 177 WRKY Transcription Factor Family AT5G13080 61.438 5.12e-59 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g00558 WRKY 1.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00558 - - ccaj:109792402 253.832