Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00557 ATGGCGAACTCTTTTCGTCcactttttctctctcaatcGCATTTTCCCTCTCTTCCTCATTGCACCTTCAAATTCTCCACCACTCGCTGCAATTACTCATCTCTTGAAgTTAGAGATGTTAGTTATCAACCTCCAGGGACTCAGCTTAAGCTTCTCAATTCAGTTAATTTTTCGCTTCCGGAGAAAAGTTTAGGTCTAATTTTCGGACAGAGTGGAAGCGGAAAAACAACTCTCTTGCAGCTCCTTGCAGGAATAAGTAAACCAACATCTGGATCCATTCACATTCAAAAATACGGGGATGATGGGAATCCTAGTCAATCTCCGGAGCCCTTGGTGCCGGAAAGGGTTGGTATTGTCTTCCAGTTTCCGGAGAgATATTTTGTTGCTGATACTGTACTTGATGAAGTCACTTTTGGGTGGCCAAGGCAAAAGGGTAATGATCAATTAAGGGAGAATCTTGCTCTAGGGCTTCAGAGGGCAATTAACTGGGTAGTTGGATTAAGTGGGATATCATTGGATAAGAATCCTCACTCCCTCAGCGGTGGTTACAAGCGTCGCCTTGCTTTGGCAATACAATTGgTGCAAATCCCCGATTTACTAATATTGGATGAACCTCTTGCCGGACTTGATTGGAAAGCACGTGCGGATGTTGTGAAGCTTTTAAAGCACCTAAAAAAAGAGTTAACTGTGCTAGTTGTTAGCCATGACTTGAGGTTTGAGTTTGCAAGTCTAGTTGATCAATCATGGAGGATGGAAATGGGTGGCAATCTTAGACAGGAGCTTCTaccattataa 795 0.4164 MANSFRPLFLSQSHFPSLPHCTFKFSTTRCNYSSLEVRDVSYQPPGTQLKLLNSVNFSLPEKSLGLIFGQSGSGKTTLLQLLAGISKPTSGSIHIQKYGDDGNPSQSPEPLVPERVGIVFQFPERYFVADTVLDEVTFGWPRQKGNDQLRENLALGLQRAINWVVGLSGISLDKNPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLDWKARADVVKLLKHLKKELTVLVVSHDLRFEFASLVDQSWRMEMGGNLRQELLPL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00557 264 CDD ABC_cobalt_CbiO_domain1 36 254 IPR015856 GO:0005524|GO:0016020|GO:0055085
Tsu04g00557 264 Pfam ABC transporter 52 206 IPR003439 GO:0005524
Tsu04g00557 264 Gene3D - 22 261 IPR027417 -
Tsu04g00557 264 PANTHER HEAVY METAL TRANSPORTER 27 260 - -
Tsu04g00557 264 PANTHER ABC TRANSPORTER I FAMILY MEMBER 11, CHLOROPLASTIC 27 260 - -
Tsu04g00557 264 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 264 IPR003439 GO:0005524
Tsu04g00557 264 SMART AAA_5 61 264 IPR003593 -
Tsu04g00557 264 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 254 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00557 Tsu-Chr4 5175893 5180701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00557 35 237 Calmodulin-binding Proteins AT2G36910 25.962 1.49e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00557 - - vun:114196181 409.453