Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00553 ATGGAtcccaaaaactcaaaacaacaaacacaactttcaaacaacaacaacaacatgggagaaaacaaacaacaatCTGATTCAAAAAACCTTCAAATTGTGTTATCTGAAACAAACAACAAAGATTCAGAAACAACAAAGAAACAATTAGCACCAAAAAGAACATCAAACAAAGACAGACACACAAAAGTTGAAGGAAGAGGTAGAAGAATAAGGATGCCAGCTTTATGTGCTGCTAGAATTTTTCAACTCACAAGAGAATTAGGTCATAAATCAGATGGTGAAACAATTCAATGGCTTCTTCAACAATCTGAACCATCAATTATAGCTGCAACTGGTACAGGAACAATTCCTGCTTCAGCtttatcttcatcttcaaaCACTTTAACAAACCAATCTTCATCTTTATCTTCTGGTTTACAACTTGATAATAGAACAACAAATTGGGCTTCTCAAGCCCATCAACAAGCCCAACAAGCCCATCATGTTAGTTCTTCAAGTTTATGGCAACATGGATTTGGTTTTCAACAATCATCATCTACTAGTGAAAATAATagttcaaattattttcaaaaaattggtTTTTCTGGTTTTGATATGCCAAATTCAGCAACAAATTTAGGTGGAATGAGTTTTACTTCAATTTTGGGTGGAAATCAACAGATGCCTGGTTTGGAATTAGGATTATCACAAGATGGACATATTGGTGTATTGAATCAACAAGCTTTGACTCAGATTTATCAACAGATTGGTCAAAATCAAACTAGGGTTCAACAGCAGAATCCTACTAAAGATGATTCTCAAAGTTCAGGACAGTAG 819 0.3028 MDPKNSKQQTQLSNNNNNMGENKQQSDSKNLQIVLSETNNKDSETTKKQLAPKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALSSSSNTLTNQSSSLSSGLQLDNRTTNWASQAHQQAQQAHHVSSSSLWQHGFGFQQSSSTSENNSSNYFQKIGFSGFDMPNSATNLGGMSFTSILGGNQQMPGLELGLSQDGHIGVLNQQALTQIYQQIGQNQTRVQQQNPTKDDSQSSGQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00553 272 MobiDBLite consensus disorder prediction 1 40 - -
Tsu04g00553 272 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
Tsu04g00553 272 Pfam TCP family transcription factor 55 168 IPR017887 -
Tsu04g00553 272 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 271 IPR005333 GO:0003700
Tsu04g00553 272 MobiDBLite consensus disorder prediction 1 69 - -
Tsu04g00553 272 MobiDBLite consensus disorder prediction 41 69 - -
Tsu04g00553 272 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 1 271 - -
Tsu04g00553 272 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00553 Tsu-Chr4 5135934 5138661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00553 23 272 TCP Transcription Factor Family AT3G27010 52.837 4.68e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu04g00553 TCP 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00553 - - rcu:8285315 290.426