Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00535 ATGGAAAATTCTAATTCTAATGAAAATggttttcacaaaaaaattaatgtaaagtTAACAAATGAACCAACACTTGTTCAACCAtctgaagaaacaaagaaaGGAATGTATTTCTTATCAAACCTTGATCAAAACATAGCTGTAATTGTAAGAACTGTTTACTGTTTCAAAAATGAAGAAAAGGGAAATGAGAATGCTAATGAAGTGATTAAGAATGCATTAAAGGATGTTCTTGTTCATTATTATCCTCTTGCTGGAAGATTAAGTATAAGCTCAGAAGGTAAACTTATTGTAGATTGTACAGGAGAAGGTGCTCTTTTTGTTGAAGCTGAAGCTAATTGTTTAATGGAAGAAATTGGTGATATTACAAAACCTGATCCTAGGACTCTTGGTATGTTGGTTTATGATATTCCTGATGCTAAACATATTCTTCAGATGCCTCCTTTGGTTGCTCAGGTAACAAAGTTTAAATGTGGAGGTTTTTCTCTTGGACTATGCATGAATCACTGTATGTTTGATGGAATTGGAGCTATGGAGTTTGTGAATTCATGGGGAGAACTAGCAAGAGGCCAACCACTTTCAATCCCTCCAATTCTAGACAGAACCATTCTAAAGGCGCGCAATCCGCCAAAGATAGAGCATTTGCACCAAGAATTTGCTGACATTGAAGACAAATCAAATACAAATAGCTTATATGAAGATGAAATGGTGTATAGATCATTCTGTTTTGATCTTGAGAAACtaaaagaattgaagaaaaaagcTATGGAAGATGAAAATGGTGTTCTTGAATCTTGCACAACATTCGAAGTTCTTTCGGCATTTGTTTGGATAGCTAGAACAAAAGCACTTAAACTTTTGCCAGAACAAGAAACAAAGCTTCTTTTTGCTGTTGATGGAAGGGCAAAATTTGAACCAAAACTTCCAAAAGGGTATTTTGGGAATGGAATTGTACTAACAAAATCGGTTTGTAAAGCAGGTGAAATTACGAACAAGCCCTTATCGTATACCGTGAAAGCTATTCAAGAAGCAATTAAGAGTGTCACTGATAGTTACATGAGATCAGCTATTGATTATTTTGAGGTAACAAGAGCTAGGCCTTCTTTGGCTTGTACACTTTTGATCACAACTTGGTCGCGGCTTCCATTTCATACCACCGATTTCGGTTGGGGAGAACCTGTTTTGTCCGGACCGGTTTCATTGCCTGAGAAGGAAGTGATTTTGTTCCTTTCACATGGTCAAGAGAGGAGAAGCATTAATGTGCTTCTTGGTTTGCCTGCTCCTGTCATGAAGATCTTTCAAGATTTGATGATGCAGATATAA 1323 0.35 MENSNSNENGFHKKINVKLTNEPTLVQPSEETKKGMYFLSNLDQNIAVIVRTVYCFKNEEKGNENANEVIKNALKDVLVHYYPLAGRLSISSEGKLIVDCTGEGALFVEAEANCLMEEIGDITKPDPRTLGMLVYDIPDAKHILQMPPLVAQVTKFKCGGFSLGLCMNHCMFDGIGAMEFVNSWGELARGQPLSIPPILDRTILKARNPPKIEHLHQEFADIEDKSNTNSLYEDEMVYRSFCFDLEKLKELKKKAMEDENGVLESCTTFEVLSAFVWIARTKALKLLPEQETKLLFAVDGRAKFEPKLPKGYFGNGIVLTKSVCKAGEITNKPLSYTVKAIQEAIKSVTDSYMRSAIDYFEVTRARPSLACTLLITTWSRLPFHTTDFGWGEPVLSGPVSLPEKEVILFLSHGQERRSINVLLGLPAPVMKIFQDLMMQI 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00535 440 Pfam Transferase family 22 436 - -
Tsu04g00535 440 Gene3D - 17 218 IPR023213 -
Tsu04g00535 440 Gene3D - 219 440 IPR023213 -
Tsu04g00535 440 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 17 438 - -
Tsu04g00535 440 PANTHER OMEGA-HYDROXYPALMITATE O-FERULOYL TRANSFERASE 17 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00535 Tsu-Chr4 4947822 4950218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00535 14 440 Monolignol Biosynthesis Gene Families AT5G48930 35.294 3.48e-87 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00535 K15400 - gmx:100792433 731.48